BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4273.p
         (396 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980406|ref|YP_001352937.1| aromatic amino acid aminotransf...   396   e-111

>gi|152980406|ref|YP_001352937.1| aromatic amino acid
           aminotransferase [Janthinobacterium sp. Marseille]
          Length = 404

 Score =  396 bits (1017), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 187/386 (48%), Positives = 254/386 (65%), Gaps = 2/386 (0%)

Query: 11  DPILSLMEQFQRDERSNKVNLSIGIYTDGRGVVPVLPTVRAAAAAVAEAGAPYVYLPMEG 70
           DPIL + E F  D+  NK+NL +G+Y D  G +P+L  VR A   +AE  +P  YLP++G
Sbjct: 19  DPILGITEAFNADKNPNKINLGVGVYNDDNGKLPLLECVRKAEVLLAEKLSPRGYLPIDG 78

Query: 71  HAAYRQAVAKLLFGAD--LPSTEHLAIVQTLGGSGALKVGADLIARFFPQPTIWLPDPTW 128
            AAY +AV +L+FGAD  +   +     Q +GG+GALK+GAD + RF P   +W+ DP+W
Sbjct: 79  LAAYDKAVQELVFGADSAVVKEKRAVTAQAIGGTGALKLGADFLKRFAPNAQVWISDPSW 138

Query: 129 DNHVGIFEGAGFKTERYPYYDAQTKGLDFPAMLAKLDSLSKGAVVLLHPCCHNPTGVDPT 188
           +NH  +FE AGF    YPYYDA T+G++F  ML  L S+  G++VLLH CCHNPTG D T
Sbjct: 139 ENHRALFESAGFVVNNYPYYDAATRGVNFAGMLDTLKSIPSGSIVLLHACCHNPTGADLT 198

Query: 189 RAQWEEIIAVVEKRGLLPFFDLAYQGFAESLDEDIWPVREAVRRQIPFFLSNSFSKIFSL 248
            AQW ++I VV KRGL+PF D+AYQGF + ++ D   VR+      P F+SNSFSK FSL
Sbjct: 199 DAQWAQVIEVVLKRGLIPFLDMAYQGFGDGIESDGKVVRQFAEAGGPVFVSNSFSKSFSL 258

Query: 249 YSERIGALSVFCPQSGQAANVLGQLKLTVRRNYSSPARNGALLVAHVLGDDKLATQWRAE 308
           Y ER+GALS+    + +AA VL QLK  +R NYS+P  +G  +VA  L   +L   W  E
Sbjct: 259 YGERVGALSIVAVSAEEAARVLSQLKRVIRTNYSNPPIHGGQVVATALATPELRALWEEE 318

Query: 309 VEEMRVRVRDMRVKLASQLKSAVPDQDFSFLLRQNGMFGYTGLSSAQVDRLREEFGVYAV 368
           +  MRVR+RDMR     +LK   P  +F F+++Q GMF Y+GL+  QV+RLR+E+ +YA+
Sbjct: 319 LAGMRVRIRDMRQAFVQKLKEQAPAHNFDFVIQQRGMFSYSGLTKEQVNRLRDEYSIYAI 378

Query: 369 GTGRICVAGLNDSNVARVAETMAEVL 394
            TGRICVA LN  N+  V   +A+V+
Sbjct: 379 DTGRICVAALNTRNIDYVVGAIAKVI 404


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.137    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 877,638
Number of extensions: 34830
Number of successful extensions: 104
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 311
Effective length of database: 906,776
Effective search space: 282007336
Effective search space used: 282007336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)