BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4268.p (260 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982288|ref|YP_001355126.1| short chain dehydrogenase [Jant... 348 2e-97 gi|152981493|ref|YP_001353708.1| short-chain dehydrogenase [Jant... 95 4e-21 gi|152981443|ref|YP_001353048.1| 3-oxoacyl-[acyl-carrier protein... 79 2e-16 gi|152982900|ref|YP_001352586.1| short chain dehydrogenase [Jant... 72 4e-14 gi|152981530|ref|YP_001353550.1| short chain dehydrogenase/reduc... 70 1e-13 >gi|152982288|ref|YP_001355126.1| short chain dehydrogenase [Janthinobacterium sp. Marseille] Length = 259 Score = 348 bits (893), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 177/246 (71%), Positives = 203/246 (82%), Gaps = 1/246 (0%) Query: 15 ALVTGAARRIGRHIALALAQAGWDVAVHYNRSRQEAEELVREIEDLGRRALAVQGELGDQ 74 ALVTGAARRIGR IALALAQ GWDV VHY+RS EA+ V +I LG+RA+A+Q +L D+ Sbjct: 13 ALVTGAARRIGRTIALALAQGGWDVVVHYSRSESEAQATVADIIALGQRAIALQCDLADE 72 Query: 75 AQVRALLPQAAP-LGRISCVVNNASLFDYDDAASFGNDRLLRHMSANVGAPVLLAQALFE 133 A V+ LL +AA LG ISCVVNNASLFDYD AA F L HM N+ AP+LLAQAL + Sbjct: 73 AAVKTLLRRAATQLGPISCVVNNASLFDYDSAADFSVATLDAHMHTNLAAPILLAQALHQ 132 Query: 134 ITPAGEQAVVVNLLDQKLYNPNPDFLSYTLSKAALHSATTLLAQALAPKVRVVGVAPGLT 193 TP G QAVVVNLLDQKL+N NPDFLSYTLSKAALH+ATT+LAQALAPKVRVVGVAPG+T Sbjct: 133 ATPEGAQAVVVNLLDQKLFNLNPDFLSYTLSKAALHTATTMLAQALAPKVRVVGVAPGIT 192 Query: 194 MVSGDQTEEQFGKAHTVTPLGRGSTPEDIAAAVCYVASARAVTGTTLLVDGGQHLLPLSR 253 +VSGDQ+E +F +AH VTPLGR STP+DIA AV +V A+A+TGTTLLVDGGQHL+PL R Sbjct: 193 LVSGDQSEAEFERAHKVTPLGRSSTPDDIAHAVRFVVEAQAMTGTTLLVDGGQHLIPLQR 252 Query: 254 DVMFVA 259 DVMFVA Sbjct: 253 DVMFVA 258 >gi|152981493|ref|YP_001353708.1| short-chain dehydrogenase [Janthinobacterium sp. Marseille] Length = 246 Score = 95.1 bits (235), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 77/246 (31%), Positives = 121/246 (49%), Gaps = 11/246 (4%) Query: 8 SPSSAGVALVTGAARRIGRHIALALAQAGWDVAVHYNRSRQEAEELVREIEDLGRRALAV 67 S + VA++TGA+R IG IA LAQ G+ V ++Y S EA+ LV +++ A+AV Sbjct: 2 SKQTKKVAIITGASRGIGAAIAERLAQDGFAVVINYASSATEADALVAKLQAAQHEAIAV 61 Query: 68 QGELGDQAQVRALLPQAA-PLGRISCVVNNASLFDYDDAASFGNDRLLRHMSANV-GAPV 125 + ++ + A VR L + LG++ ++NNA + A ++ R S NV G Sbjct: 62 KADVANSADVRRLFDETEQKLGKVDVLINNAGILQMASLAETSDELFERTFSINVRGTFN 121 Query: 126 LLAQALFEITPAGEQAVVVNLLDQKLYNPNPDFLSYTLSKAALHSATTLLAQALAPK-VR 184 L +A + G VVN + P++ YT SKAA+ T + A+ + + + Sbjct: 122 TLREAATRLNDGGR---VVNFSSTTVAMSLPNYSVYTGSKAAVEVLTPIFAKEMRGRNIT 178 Query: 185 VVGVAPG---LTMVSGDQTEEQFGKAHTVTPLGRGSTPEDIAAAVCYVASARA--VTGTT 239 V VAPG + +TE Q + + PL R P+DIAAAV ++ + G Sbjct: 179 VNAVAPGPVATDLFFNGKTEAQIQQLANMPPLQRLGQPDDIAAAVSFLVGRDGGWINGQV 238 Query: 240 LLVDGG 245 L +GG Sbjct: 239 LRANGG 244 >gi|152981443|ref|YP_001353048.1| 3-oxoacyl-[acyl-carrier protein] reductase [Janthinobacterium sp. Marseille] Length = 247 Score = 79.3 bits (194), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 78/250 (31%), Positives = 126/250 (50%), Gaps = 11/250 (4%) Query: 6 MTSPSSAG-VALVTGAARRIGRHIALALAQAGWDVAVHYNRSRQEAEELVREIEDLGRRA 64 MT+ +G VALVTGA+R IGR IA LA+ G V + S A + E LG Sbjct: 1 MTTVDLSGQVALVTGASRGIGRAIAQELAKLGAKV-IGTATSESGAAAIS---EYLGNGG 56 Query: 65 LAVQGELGDQAQVRALLPQ-AAPLGRISCVVNNASLFDYDDAASFGNDRLLRHMSANVGA 123 V ++ D A+ AL+ + G +S +VNNA + A ++ ++ N+ A Sbjct: 57 KGVVLDVNDAARSVALIDEIQKEFGAVSILVNNAGITQDQLAMRMKDEEWDSVIATNLTA 116 Query: 124 PVLLAQALFEITPAGEQAVVVNLLDQKLYNPNPDFLSYTLSKAALHSATTLLAQALAPK- 182 L++A+ + ++N+ + N ++Y +KA + + LA+ + + Sbjct: 117 VGRLSRAVLRGMMKAKTGRIINITSVVGSSGNAGQMNYAAAKAGVAGMSRALAREIGSRN 176 Query: 183 VRVVGVAPGL--TMVSGDQTEEQFGKAHTVTPLGRGSTPEDIAAAVCYVASARA--VTGT 238 + V +APG T ++ +E+Q PLGR PEDIAAAV ++AS +A +TGT Sbjct: 177 ITVNCIAPGFIDTDMTKTLSEQQIAALLQQVPLGRLGVPEDIAAAVSFLASPQASYITGT 236 Query: 239 TLLVDGGQHL 248 TL V+GG ++ Sbjct: 237 TLHVNGGMYM 246 >gi|152982900|ref|YP_001352586.1| short chain dehydrogenase [Janthinobacterium sp. Marseille] Length = 278 Score = 71.6 bits (174), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 81/265 (30%), Positives = 115/265 (43%), Gaps = 37/265 (13%) Query: 3 TRNMTSPSSAGVALVTGAARRIGRHIALALAQAGWDVAVHYNRSRQEAEELVREIEDLGR 62 + M +P+ L+TGA IGR A A A+ G+ VAV R + L E+ LG Sbjct: 27 SNEMNTPT----VLITGALTGIGRATAFAFAREGYRVAVS-GRREEAGNALAAELRALGN 81 Query: 63 RALAVQGELGDQAQVRALLPQA-APLGRISCVVNNA------------SLFDYDDAASFG 109 A + ++ +A VR L+ Q GRI VNNA S +Y A +FG Sbjct: 82 EAEFLLADVRFEADVRNLVEQTVVRFGRIDVAVNNAGTEGQLAPIVEQSAANY--AETFG 139 Query: 110 NDRLLRHMSANVGAPVLLAQALFEITPAGEQAVVVNLLDQKLYNPNPDFLSYTLSKAALH 169 + L +S V+LAQ I A V + +Y + + AAL Sbjct: 140 VNVLGTMLSLKHEMRVMLAQGSGSIINLSSVAGKVGIAGASVYVASKHAVEGLTKSAALE 199 Query: 170 SATTLLAQALAPKVRVVGVAPG------LTMVSGDQTEEQFGKAHTVTPLGRGSTPEDIA 223 A A VRV VAPG L G E + G T+ P GR +TP++IA Sbjct: 200 GA--------AAGVRVNAVAPGPVATEMLDRFVGGSEENKAGFLATI-PAGRAATPDEIA 250 Query: 224 AAVCYVASARA--VTGTTLLVDGGQ 246 + ++AS + +TG ++ VDGG Sbjct: 251 QTIVFLASDKVSYLTGQSIAVDGGH 275 >gi|152981530|ref|YP_001353550.1| short chain dehydrogenase/reductase family oxidoreductase [Janthinobacterium sp. Marseille] Length = 249 Score = 70.1 bits (170), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 72/237 (30%), Positives = 107/237 (45%), Gaps = 6/237 (2%) Query: 14 VALVTGAARRIGRHIALALAQAGWDVAVHYNRSRQEAEELVREIEDLGRRALAVQGELGD 73 VA V G +R IG I LA+ G VA Y S +A+ + +EIE G RALA+ + D Sbjct: 11 VAFVQGGSRGIGAAIVKRLARDGAAVAFTYVSSADKAKAVAQEIEAAGGRALAIHADSSD 70 Query: 74 -QAQVRALLPQAAPLGRISCVVNNASLFDYDDAASFGNDRLLRHMSANVGAPVLLAQALF 132 A +A+ A GRI +VNNA + F + R ++ NV + + Q Sbjct: 71 ASAVQQAIQAAAKAFGRIDILVNNAGVLALAPVEDFKLEDFDRTVAVNVRSVFVATQEAA 130 Query: 133 EITPAGEQAVVVNLLDQKLYNPNPDFLSYTLSKAALHSATTLLAQALAPK-VRVVGVAPG 191 G + + + + P Y +SKAA+ T LA+ L P+ + V V PG Sbjct: 131 RHMGEGGRIITIGSTNADRM-PFAGGAVYAMSKAAIVGLTKGLARDLGPRGITVNNVQPG 189 Query: 192 LTMVSGDQTEEQFGKA-HTVTPLGRGSTPEDIAAAVCYVASARA--VTGTTLLVDGG 245 + F + +GR E+IA+ V Y+A A +TG +L +DGG Sbjct: 190 PVDTDMNPANSDFADTLKGLMAIGRYGKDEEIASFVAYLAGPEAGYITGASLTIDGG 246 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.132 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 583,046 Number of extensions: 23035 Number of successful extensions: 131 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 117 Number of HSP's successfully gapped: 11 Length of query: 260 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 179 Effective length of database: 921,564 Effective search space: 164959956 Effective search space used: 164959956 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)