BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4267.p
         (386 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981198|ref|YP_001355125.1| hypothetical protein mma_3435 [...   471   e-134

>gi|152981198|ref|YP_001355125.1| hypothetical protein mma_3435
           [Janthinobacterium sp. Marseille]
          Length = 386

 Score =  471 bits (1212), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 249/392 (63%), Positives = 286/392 (72%), Gaps = 12/392 (3%)

Query: 1   MQLQLPEPGEDAQAASQTLQHLIAGEIAAAGGWISFERYMELALYAPQVGYYSGGSAKLG 60
           MQLQLPEP  DA +AS TLQ+LIA EI    GWISF RYMELALYAP VGYYSGG+AKLG
Sbjct: 1   MQLQLPEPSSDALSASNTLQNLIADEINRRAGWISFARYMELALYAPDVGYYSGGAAKLG 60

Query: 61  KEGDFTTAPEISPLYGATLAHLAAEVIAAS-PQVANVLLEFGAGTGKLAHDILTELQARD 119
           K+GDFTTAPEI+ L+G TLAH A E++A S PQ+    LEFGAGTGKLA DILTE  A  
Sbjct: 61  KDGDFTTAPEITSLFGETLAHAAGELMAQSAPQI----LEFGAGTGKLALDILTECAAAG 116

Query: 120 ALPETYFIVEISAQLRARQQEALAAFAPKVQWLDALPETFSGVVVGNEVLDAMPVRLAVK 179
              E Y IVE+S +LRARQQ+ LA F P+V WLD  P  FSGVV+GNEVLDAMPV L VK
Sbjct: 117 IPLERYSIVELSGELRARQQQTLAGF-PQVSWLDDFPPAFSGVVLGNEVLDAMPVSLVVK 175

Query: 180 AAEGWLERGVALDGAGQLRFEDRAVAGLPLAQIPDAEDLPSGYLTELSPVAIGFMRTLGR 239
               WLERGV++   G+  F DR      + QIPDA +LP GYLTE+ P+A GFM TL  
Sbjct: 176 GEAEWLERGVSI-ADGRFIFVDRPCDQELITQIPDAAELPVGYLTEVHPIAAGFMHTLAT 234

Query: 240 MVA-----NGPGALAILPDYGFPAAEYYLYDRDQGTLMCHYRHHAHTDPFYWPGLQDITA 294
           M+      +G G  AIL DYGFPA+EYYL  R +GTLMCHYRHH+H DPFY PGLQDITA
Sbjct: 235 MLTAGFEQSGKGGAAILIDYGFPASEYYLDQRAEGTLMCHYRHHSHPDPFYLPGLQDITA 294

Query: 295 HVDFTAMAVAAVEQGAEVLAYTSQGAFLLNAGIGELLLRTSPEDSARYLPLANGMQKLIS 354
           HVDFT+MA AAV  G E++ Y SQ  FLL AG+G+ LL T+PED   YLP AN +QKL S
Sbjct: 295 HVDFTSMAYAAVRNGLEMVGYMSQAGFLLTAGLGDRLLATAPEDHMAYLPKANAVQKLTS 354

Query: 355 PAEMGELFKVLAIGKHVQWPARMLRHDRTHRL 386
           PAEMGELFKVL +GK VQ P +  R D++ RL
Sbjct: 355 PAEMGELFKVLVVGKAVQLPDQFDRADQSRRL 386


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.136    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 929,068
Number of extensions: 40023
Number of successful extensions: 115
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 301
Effective length of database: 906,776
Effective search space: 272939576
Effective search space used: 272939576
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)