BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4265.p (218 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981323|ref|YP_001354612.1| two components system response ... 192 1e-50 gi|152981350|ref|YP_001354553.1| two-components system response ... 185 2e-48 gi|152981423|ref|YP_001354086.1| two-components system response ... 175 2e-45 gi|152983128|ref|YP_001354753.1| two-component response regulato... 169 2e-43 gi|152980825|ref|YP_001354044.1| heavy metal response regulator ... 164 4e-42 >gi|152981323|ref|YP_001354612.1| two components system response regulator [Janthinobacterium sp. Marseille] Length = 229 Score = 192 bits (489), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 102/218 (46%), Positives = 145/218 (66%), Gaps = 2/218 (0%) Query: 1 MRVLLVEDDPMVGEAVRKGLRQDGFTIDWVQDGKSADVALRTEDYAMLLLDLGLPQKDGL 60 MR+L+VEDD ++ A+ + L Q G+++D V +G+ A AL + YA+LLLD+ LP+ DGL Sbjct: 1 MRILIVEDDAVLAAALTRALTQAGYSVDHVDNGEDAHRALANDIYALLLLDISLPKMDGL 60 Query: 61 AVLRTLRERGNTIPVLITTARDAVADRVAGLDAGADDYLIKPFDLEELSARMRALSRRQA 120 AVLR LRER + +PVLI TARD + DRVAGLD GADDY+ KPFDL E AR+RAL RR Sbjct: 61 AVLRRLRERKSRLPVLILTARDTLDDRVAGLDLGADDYMTKPFDLPEFEARVRALIRRGQ 120 Query: 121 GRAESLVQVREVVLNPATHEVTVGGNPVNLSAREFALLQAFMDRPGVVLSRAQLEEKLYG 180 A ++ + + H + PV LS RE A+ + + R G V+++ Q+ ++L+G Sbjct: 121 FDAGKMLTHGGLRFDLEAHRLFYNDQPVELSVRELAVFEVLLSRQGQVVTKEQMIDRLFG 180 Query: 181 WDDSIESNAVEVHIHALRKKVG--SDFIKNVRGVGYLV 216 W D SNA+EV++H RKK+ + I+ VRG+GYL+ Sbjct: 181 WGDDGGSNAIEVYVHRTRKKLEPYNINIRTVRGMGYLL 218 >gi|152981350|ref|YP_001354553.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 233 Score = 185 bits (469), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 94/218 (43%), Positives = 141/218 (64%), Gaps = 2/218 (0%) Query: 1 MRVLLVEDDPMVGEAVRKGLRQDGFTIDWVQDGKSADVALRTEDYAMLLLDLGLPQKDGL 60 MR+LL EDD ++ + + + LRQ G+ D V++G AD L T+D+ +L+LDLGLP+ GL Sbjct: 1 MRILLAEDDSVLADGLTRSLRQSGYATDCVKNGAEADSVLSTQDFDLLILDLGLPKMSGL 60 Query: 61 AVLRTLRERGNTIPVLITTARDAVADRVAGLDAGADDYLIKPFDLEELSARMRALSRRQA 120 VL+ LR R + +PVLI TA D++ RV GLD GADD++ KPF L EL AR+RAL+RR A Sbjct: 61 EVLQRLRARNSRLPVLILTAGDSIEQRVKGLDLGADDFMAKPFALSELEARVRALTRRGA 120 Query: 121 GRAESLVQVREVVLNPATHEVTVGGNPVNLSAREFALLQAFMDRPGVVLSRAQLEEKLYG 180 G ++++ + + + ++LSARE LL+ + R G ++S+ QL + L Sbjct: 121 GGGPTVIKHGPLSYDQVGRIAYINDQMLDLSARELGLLEVLLQRSGRLVSKEQLVDHLCE 180 Query: 181 WDDSIESNAVEVHIHALRKK--VGSDFIKNVRGVGYLV 216 W + + +NA+EV++H LRKK +G I VRG+GY + Sbjct: 181 WSEEVSNNAIEVYVHRLRKKIEIGGLRIATVRGLGYCL 218 >gi|152981423|ref|YP_001354086.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 221 Score = 175 bits (443), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 93/216 (43%), Positives = 133/216 (61%) Query: 1 MRVLLVEDDPMVGEAVRKGLRQDGFTIDWVQDGKSADVALRTEDYAMLLLDLGLPQKDGL 60 MR LLVEDDP VG+ V + L++ GF +DW +DG A E++ + +LDLGLPQ DGL Sbjct: 1 MRALLVEDDPDVGQHVLQALQEAGFVVDWSRDGNDAWFKGDVEEFDVAILDLGLPQLDGL 60 Query: 61 AVLRTLRERGNTIPVLITTARDAVADRVAGLDAGADDYLIKPFDLEELSARMRALSRRQA 120 +VLR R T PVLI +AR +++V G+++GADDYL KPF++ EL AR RAL RR A Sbjct: 61 SVLRRWRAAKRTFPVLILSARSDWSEKVEGIESGADDYLAKPFEVAELIARTRALVRRAA 120 Query: 121 GRAESLVQVREVVLNPATHEVTVGGNPVNLSAREFALLQAFMDRPGVVLSRAQLEEKLYG 180 G A+ ++ + L+ TV PV LS EF + G +S +L E LYG Sbjct: 121 GHADPVLICGALTLDTRRMTATVDKQPVRLSPLEFRFFSYLAHQAGRPVSAGELAEHLYG 180 Query: 181 WDDSIESNAVEVHIHALRKKVGSDFIKNVRGVGYLV 216 + +++NA+E + +R+K G+D I+ RG GY++ Sbjct: 181 DSEGVDTNAIEALVLRMRRKFGADLIETRRGFGYML 216 >gi|152983128|ref|YP_001354753.1| two-component response regulator [Janthinobacterium sp. Marseille] Length = 239 Score = 169 bits (427), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 87/214 (40%), Positives = 137/214 (64%) Query: 1 MRVLLVEDDPMVGEAVRKGLRQDGFTIDWVQDGKSADVALRTEDYAMLLLDLGLPQKDGL 60 M+VL+VEDD ++ + GL+ G V SA+ A+ D+ +++LDLGLP +DGL Sbjct: 20 MQVLVVEDDELIASGLAAGLQAHGMVAVCVTTAVSAEQAIYAADFDVMVLDLGLPDQDGL 79 Query: 61 AVLRTLRERGNTIPVLITTARDAVADRVAGLDAGADDYLIKPFDLEELSARMRALSRRQA 120 +L+ R R ++PV++ TARDA+ R+AGL +GADDY++KPFDL EL+AR+ A+ RR Sbjct: 80 TLLKETRSRKLSLPVIVLTARDAIEYRIAGLQSGADDYVLKPFDLGELAARIHAVVRRSK 139 Query: 121 GRAESLVQVREVVLNPATHEVTVGGNPVNLSAREFALLQAFMDRPGVVLSRAQLEEKLYG 180 GRA + + L+P +V + + LS REF +L + G L+ + L ++++G Sbjct: 140 GRATQEITAGPLRLDPQYGQVWLNEKLIALSRREFDILIHLANAAGHWLAPSTLRDRVFG 199 Query: 181 WDDSIESNAVEVHIHALRKKVGSDFIKNVRGVGY 214 D I SNA+ VHIH +R+K+G++ I+ RG+G+ Sbjct: 200 EDIQISSNALNVHIHNIRRKLGAEAIETSRGLGF 233 >gi|152980825|ref|YP_001354044.1| heavy metal response regulator [Janthinobacterium sp. Marseille] Length = 223 Score = 164 bits (415), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 93/220 (42%), Positives = 136/220 (61%), Gaps = 5/220 (2%) Query: 1 MRVLLVEDDPMVGEAVRKGLRQDGFTIDWVQDGKSADVALRTEDYAMLLLDLGLPQKDGL 60 M++LLVED+ GE +RKGLR+ GF +DW +DG E Y +++LD+ LP DG Sbjct: 1 MKILLVEDEVKSGEYLRKGLREAGFVVDWARDGAEGLQLALQESYELVILDVMLPLLDGW 60 Query: 61 AVLRTLRERGNTIPVLITTARDAVADRVAGLDAGADDYLIKPFDLEELSARMRALSRRQA 120 +LR LR+ +T PVL TARD V DRV GL+ GADDYL+KPF EL AR+R L RR Sbjct: 61 QLLRELRKVRDT-PVLFLTARDEVEDRVKGLELGADDYLVKPFSFMELIARVRTLLRRGP 119 Query: 121 GRAESLVQVREVVLNPATHEVTVGGNPVNLSAREFALLQAFMDRPGVVLSRAQLEEKLYG 180 R SL+++ ++ ++ VT G ++L+A+EF+LL R G VLSR+ + +++ Sbjct: 120 VRESSLIEIADMQIDVMKRRVTRNGERLDLTAKEFSLLHLLAQRRGEVLSRSLIASQVWD 179 Query: 181 WDDSIESNAVEVHIHALRKKVGS----DFIKNVRGVGYLV 216 + ++N V+V I LR K+ I+ VRG+GY++ Sbjct: 180 MNFDSDTNVVDVAIRRLRAKLDDPHPRKLIQTVRGIGYVL 219 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.137 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 514,978 Number of extensions: 20846 Number of successful extensions: 166 Number of sequences better than 1.0e-08: 32 Number of HSP's gapped: 140 Number of HSP's successfully gapped: 32 Length of query: 218 Length of database: 1,221,021 Length adjustment: 80 Effective length of query: 138 Effective length of database: 925,261 Effective search space: 127686018 Effective search space used: 127686018 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)