BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4264.p (451 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982852|ref|YP_001354554.1| sensor histidine kinase transcr... 194 1e-50 gi|152982775|ref|YP_001354611.1| two-components system response ... 187 9e-49 gi|152980826|ref|YP_001354043.1| heavy metal sensor kinase [Jant... 127 2e-30 gi|152983127|ref|YP_001354752.1| two-component sensor kinase [Ja... 123 3e-29 gi|152982254|ref|YP_001352483.1| sensor kinase of copper sensing... 120 1e-28 >gi|152982852|ref|YP_001354554.1| sensor histidine kinase transcription regulator protein [Janthinobacterium sp. Marseille] Length = 544 Score = 194 bits (493), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 123/332 (37%), Positives = 180/332 (54%), Gaps = 21/332 (6%) Query: 121 VVQVAQPQSARDEIAAQMAVKTVVPLLLLFPLIGVLSWVAVSRGLAPVRKAAAEVAARDM 180 +VQVA+ R ++ Q+ +VP ++ P+ VL W A++RGL P+ + + R Sbjct: 212 LVQVAETLDKRSQLVNQIIKGVIVPEFIILPIALVLVWFALTRGLRPLVELQQRIRERRP 271 Query: 181 NSLQPLSDVGMPQEIQPLTHALNDLLARLKHSTETQRAFVADAAHELRTPLTALRLQAQL 240 + L P+ +P+EI PL +LN++L RL S + Q+ F+ADAAH+++TPL +R+Q++L Sbjct: 272 DDLSPIDSGYVPEEILPLVGSLNEMLERLSQSIKVQKRFIADAAHQMKTPLAGMRMQSEL 331 Query: 241 AERATDEVERRAAFADLKSGLERATHLVHQLLTLAR---QEPDAMNFAEVDLRALLGSVV 297 A R TD+VE + L + AT +++QLL LAR Q P ++L L V Sbjct: 332 ALRQTDQVEIHKSLEQLAKSSKSATRMINQLLALARAENQTPTTRPLQPLELSELARDTV 391 Query: 298 GDLSSVAEHGSIDLGLSDQGDDGRPLRVQGNADALRILFNNLVDNALRYTPAGGVVDVGF 357 + + + IDLG +Q D + V G+A LR L NNL+DNAL YTPAGG V Sbjct: 392 QEWVQTSFNKKIDLGF-EQPDYH--IMVNGDAIMLRELLNNLIDNALNYTPAGGHATVRV 448 Query: 358 DLSTPGACTVV-IQDSGPGIAESELPRVFDRFYRAQRGHDQGGSRAAFGSGLGLAIVRQI 416 + ++D+GPGIA E R+F+RFYR GS GSGLGLAIVR+I Sbjct: 449 RADEEARLAYLEVEDTGPGIAPHEHKRIFERFYRIL------GSNVE-GSGLGLAIVREI 501 Query: 417 ADLHRVPVSLRNTGH-------GLQARVEFPL 441 A H + + N + G R+ PL Sbjct: 502 AQQHGAEIDILNNPNCTNPKAPGCLMRITLPL 533 >gi|152982775|ref|YP_001354611.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 470 Score = 187 bits (476), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 145/447 (32%), Positives = 223/447 (49%), Gaps = 36/447 (8%) Query: 19 IIVLAGVALYFQARGEANQIFDYQMRQIAASLPRQA----------FSPISPGQQFPELE 68 I+++ V YF R AN ++D ++ +IA + SP + + E Sbjct: 29 ILLIDIVGSYFVVRHIANDVYDVELNEIAREMLLHVTRKDGQLGFDLSPDAERTLLLDKE 88 Query: 69 DEIMMQIWDSRGAVI-----YHSHARGAMPRQAELGFANVSGPN---GMWR---VYSAQI 117 D++ I + G +I +H R+ + G + + R + Sbjct: 89 DQVYYAIHTTDGKLIAGDPNLPAHQTIKSGRETAYYDGILQGQDVRIALLRGKPLLEPPA 148 Query: 118 GSTVVQVAQPQSARDEIAAQMAVKTVVPLLLLFPLIGVLSWVAVSRGLAPVRKAAAEVAA 177 + ++Q+A+ Q RD + ++ ++P +LL + G+L W V+ GL+P+RK E+A Sbjct: 149 EAVMIQIAETQVKRDRHERALLIQLILPQVLLILIAGILIWRGVAHGLSPLRKLQQELAM 208 Query: 178 RDMNSLQPLSDVGMPQEIQPLTHALNDLLARLKHSTETQRAFVADAAHELRTPLTALRLQ 237 R L P++ +P E++PL A+NDL+ R+ Q F+AD AH+LRTP+ L+ Sbjct: 209 RSHLDLSPIAADNVPGEVEPLVGAVNDLMTRVDGVLGFQGRFIADTAHQLRTPVAGLKAH 268 Query: 238 AQLAERATDEVERRAAFADLKSGLERATHLVHQLLTLARQEPD--AMNFAEVDLRALLGS 295 A+LA R TD V+ + A L + ER + LV QLL+LAR EP+ A+NFA DL L Sbjct: 269 AELALRETDPVQVKRALGHLYTSAERLSRLVSQLLSLARNEPNNVAVNFAPFDLNQLALR 328 Query: 296 VVGDLSSVAEHGSIDLGLSDQGDDGRPLRVQGNADALRILFNNLVDNALRYTPAGGVVDV 355 + +A IDLG + + + G A + + NNLVDNA+RYTP+GG V V Sbjct: 329 TAQEWVPLAYKKQIDLGFETA---EQTVLLNGEAARVTEMINNLVDNAIRYTPSGGRVTV 385 Query: 356 GFDLSTPGACTVVIQDSGPGIAESELPRVFDRFYRAQRGHDQGGSRAAFGSGLGLAIVRQ 415 GA +V+ D G I E R+F+RF+R H++ GSGLGLAIV + Sbjct: 386 RVHKDEEGAH-LVVSDDGTRIPIDERQRIFERFHRLLGNHEE-------GSGLGLAIVHE 437 Query: 416 IADLHRVPVSLRN--TGHGLQARVEFP 440 IA LH ++L + G G V FP Sbjct: 438 IATLHNARITLEDDIDGVGNTFTVTFP 464 >gi|152980826|ref|YP_001354043.1| heavy metal sensor kinase [Janthinobacterium sp. Marseille] Length = 466 Score = 127 bits (318), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 122/395 (30%), Positives = 183/395 (46%), Gaps = 34/395 (8%) Query: 68 EDEIMMQIWDSRGAVIYHSHA-RGAMPRQAELGFANVSGPNG---MW-------RVYSAQ 116 D +++ + D G +I H+++ +G++P A L P +W R +AQ Sbjct: 82 HDRLIIMLKDVDGNIILHTNSDQGSLPTIAVLPLEMNPVPRSITLLWTSTGLTARAIAAQ 141 Query: 117 IG-----STVVQVAQPQSARDEIAAQMAVKTVVPLLLLFPLIGVLSWVAVSRGLAPVRKA 171 V+ VA+ S R E+ V+ + L L +L ++ V RGL PVR Sbjct: 142 GKVRSGEKIVIVVARTASDRMELLKAYRVEIGMAALCGTLLAALLGYILVRRGLRPVRLI 201 Query: 172 AAEVAARDMNSLQPLSDVG-MPQEIQPLTHALNDLLARLKHSTETQRAFVADAAHELRTP 230 A + ++ + L D+ PQE+ L A N +L RL S + F AD AH+LRTP Sbjct: 202 AGQASSITAHRLDTRLDLSSAPQELHELVQAFNAMLDRLDGSFQRLSQFSADLAHDLRTP 261 Query: 231 LTALRLQAQLAERATDEVE-RRAAFADLKSGLERATHLVHQLLTLARQEPD--AMNFAEV 287 L L +Q Q+A VE + ER T +V +L LAR E +N + + Sbjct: 262 LNNLMVQTQVALVQARSVEDYQGLLISNVEEYERLTRMVESMLFLARVEHTHVMLNKSAL 321 Query: 288 DLRALLGSVVGDLSSVAEHGSIDLGLSDQGDDGRPLRVQGNADALRILFNNLVDNALRYT 347 L L + +A+ + L + G RV +A LR NLV NA+ YT Sbjct: 322 SLPEELQRIADYFEGLADEAGVRLTVEAGG------RVYADAILLRRAIGNLVANAIPYT 375 Query: 348 PAGGVVDVGFDLSTPGACTVVIQDSGPGIAESELPRVFDRFYRAQRGHDQGGSRAAFGSG 407 P G + + ++ GA TV + + G GIA +P VF+RFYR D S +A +G Sbjct: 376 PRGATIVLKGVMTADGA-TVSVVNPGAGIAAQHIPHVFNRFYRG----DAARSNSATSTG 430 Query: 408 LGLAIVRQIADLHRVPVSLRNTGHGLQARVEFPLL 442 LGLAIV+ I LH ++ + +GL EF L+ Sbjct: 431 LGLAIVQSIMALHGGRATVTSEENGL---TEFSLI 462 >gi|152983127|ref|YP_001354752.1| two-component sensor kinase [Janthinobacterium sp. Marseille] Length = 445 Score = 123 bits (308), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 115/437 (26%), Positives = 197/437 (45%), Gaps = 45/437 (10%) Query: 1 MKSIRNKLLLWLGLGLFSIIVLAGVALYFQARGEANQIFDYQM----RQIAASLPRQAFS 56 M SIR +L G+ L L+ + + + + D ++ R +A L Sbjct: 1 MTSIRIHAVLVTGVALVLFWALSAIWMTNSVQENLDATLDQRLSMSARMVAGILKDTGIV 60 Query: 57 PISPGQQFPELEDEIMMQIWDSRGAVIYHSHARGAMPRQAELG-FANVSG-PNGM----- 109 +P +++ + +++ +G RG + + E G F NV P G+ Sbjct: 61 GRAPREEW-----DSALKVGGGKGIACQIRTMRGEIVAETENGPFRNVEPLPLGLSTKIV 115 Query: 110 ----WRVYSAQIGSTVVQVAQPQSARDEIAAQMAVKTVVPLLLLFPLIGVLS-WVAVSRG 164 WR Y+ Q G + + R + + +P L+ + G+L+ W+ + +G Sbjct: 116 DGQTWRAYTLQSGQYRITASDLVEERRHFVDAVLLSAGLPFLVAV-IGGLLALWIGIGKG 174 Query: 165 LAPVRKAAAEVAARDMNSLQPLSDVGMPQEIQPLTHALNDLLARLKHSTETQRAFVADAA 224 L P+ + + ++ N L P++D +E++P+ +LN +L R+ + QRAF AA Sbjct: 175 LGPLAALSKTLQKKNANDLAPIADQYASKELRPVIDSLNQMLGRVSSTLVQQRAFTDGAA 234 Query: 225 HELRTPLTALRLQAQLAERATD---EVERRAAFADLKSGLERATHLVHQLLTLARQEPDA 281 HELRTPLT + Q+A+ +T EV +A + G+ R H + Q++ LAR + Sbjct: 235 HELRTPLTIIGTHLQVAKLSTGTALEVSLNSA----EEGVRRLNHTLEQMMALARADSVT 290 Query: 282 MNFAEVDLRALLGSVVGDLSSVA-EHGSIDLGLSDQGDDGRPLRVQGNADALRILFNNLV 340 + + ++ +V L +V+ ID D G + A L NL+ Sbjct: 291 VEEECDSVSLVIEELVERLPTVSMRRLRIDFAEQDAG-------AKVPASLLHTAVRNLL 343 Query: 341 DNALRYTPAGGVVDVGFDLSTPGACTVVIQDSGPGIAESELPRVFDRFYRAQRG-HDQGG 399 DNA RY+ ++ V FD + C + + DSGPG+ E ++ V RF+R + H Q Sbjct: 344 DNAFRYSMGMVLLSVTFD-NHKKLCRISVADSGPGLTEEQISVVSQRFWRGKTSTHTQD- 401 Query: 400 SRAAFGSGLGLAIVRQI 416 GSGLGL+IV I Sbjct: 402 -----GSGLGLSIVSAI 413 >gi|152982254|ref|YP_001352483.1| sensor kinase of copper sensing two-component system [Janthinobacterium sp. Marseille] Length = 480 Score = 120 bits (302), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 84/272 (30%), Positives = 143/272 (52%), Gaps = 18/272 (6%) Query: 155 VLSWVAVSRGLAPVRKAAAEVAARDMNSLQP-LSDVGMPQEIQPLTHALNDLLARLKHST 213 +++W AV G P+RK + ++ A + L L +P E+ L + ND+L R++ Sbjct: 196 IVAWCAVQWGHRPIRKVSRDIRAIRSSRLDVRLDPTEVPIELAELAASFNDMLGRIEDGF 255 Query: 214 ETQRAFVADAAHELRTPLTALRLQAQLA---ERATDEVERRAAFADLKSGLERATHLVHQ 270 F AD AHELRTP+T L +Q ++A R++ E R +++L+ ER + ++ Sbjct: 256 AKLANFSADIAHELRTPVTNLVMQTEVALSQSRSSAEY-REILYSNLEE-FERMSRMISD 313 Query: 271 LLTLARQEPDAMN--FAEVDLRALLGSVVGDLSSVAEHGSIDLGLSDQGDDGRPLRVQGN 328 +L LA+ E D N +++ + A++ + ++AE +I L L +G V+ + Sbjct: 314 MLFLAQTENDPHNLHLSDISIAAMIQDLFDYFEALAEEANITLTL-----EGNAAPVKAD 368 Query: 329 ADALRILFNNLVDNALRYTPAGGVVDVGFDLSTPGACTVVIQDSGPGIAESELPRVFDRF 388 + + +NL+ NA++Y+ G V V TV +++ IA +LP++FDRF Sbjct: 369 REMMLRALSNLISNAIQYSAPGSTVIVHLS-QDKQVTTVSVENPAGQIAREDLPKLFDRF 427 Query: 389 YRAQRGHDQGGSRAAFGSGLGLAIVRQIADLH 420 +R D R A G+GLGLAIV+ IA+ H Sbjct: 428 FRT----DPSRKRKASGAGLGLAIVKSIAEAH 455 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.135 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 949,236 Number of extensions: 38864 Number of successful extensions: 233 Number of sequences better than 1.0e-08: 26 Number of HSP's gapped: 169 Number of HSP's successfully gapped: 27 Length of query: 451 Length of database: 1,221,021 Length adjustment: 86 Effective length of query: 365 Effective length of database: 903,079 Effective search space: 329623835 Effective search space used: 329623835 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)