BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4263.p (494 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981037|ref|YP_001353055.1| periplasmic serine protease [Ja... 392 e-110 gi|152980821|ref|YP_001354055.1| periplasmic serine protease [Ja... 374 e-105 gi|152981007|ref|YP_001354965.1| htra-like serine protease signa... 255 3e-69 >gi|152981037|ref|YP_001353055.1| periplasmic serine protease [Janthinobacterium sp. Marseille] Length = 493 Score = 392 bits (1007), Expect = e-110, Method: Compositional matrix adjust. Identities = 226/481 (46%), Positives = 306/481 (63%), Gaps = 32/481 (6%) Query: 37 AAALNAPLVASNSAPTAPAGPVVAAATDFSGIVQRYGPAVVNISVTGKARKVADDDDNGM 96 A+A P VA AP+ A P VA DF+ +V++ GPAVVNI T KA+ N Sbjct: 19 ASAFFIPAVA-GVAPSI-AAPSVAGLPDFTDLVEKTGPAVVNIRTTEKAKV---QQGNAA 73 Query: 97 DPNDPFFEFFKHF-----GPQLQMPQ-----------QPRIMHGLGSGFIISSDGLILTN 140 ++ EFF+ F P+ Q P + + G+GSGFIIS+DG ++TN Sbjct: 74 TDDEEMQEFFRRFFGAPIPPRQQQPAPRGRGKAGPDAEEEVPRGVGSGFIISADGYVMTN 133 Query: 141 AHVVDGAQEVVVKLTDRREFKAKVLGIDKQSDIAVIRIDAKNLPTVQIGDPSKVKVGQPV 200 AHVV+GA EV V LTD+RE+KAK++G D ++D+A+++I+ NLP + +GD +K++VG+ V Sbjct: 134 AHVVNGADEVYVTLTDKREYKAKIIGADTRTDVALVKIEGSNLPRLTMGDSNKIRVGEWV 193 Query: 201 LAIGSPYGFDNTATAGIVSAKSRSLPDDNYVPFIQTDVAVNPGNSGGPLFDLNGQVIGIN 260 +AIGSP+G DN+ TAGIVSAK+R D Y+P IQTDVAVNPGNSGGPL ++ G+VIGIN Sbjct: 194 IAIGSPFGLDNSVTAGIVSAKARDTGD--YLPLIQTDVAVNPGNSGGPLINMRGEVIGIN 251 Query: 261 SQIYSQTGGFQGLSFSIPIDVAMKVEQQLVTHGKVTRGRLGVSVQDLNQALSESFGLKKA 320 SQIYS++GG+ G+SF++PID AM+V QL GKVTRGR+GV + ++ + ++ES GL + Sbjct: 252 SQIYSRSGGYMGISFAVPIDEAMRVSDQLRATGKVTRGRVGVQIGEVTKDVAESLGLSRP 311 Query: 321 EGALVSSVEKGSPADKAGLEAGDVILSFDGHAIDHSVDLPTLVGDTAPGSTKPMQVMRAG 380 +GALV VE G PA+K G+EAGDVIL F+G I+ S DLP LVG T PG+ M V R G Sbjct: 312 QGALVQRVEPGGPAEKGGVEAGDVILKFNGVGIERSSDLPRLVGSTKPGTRSVMTVWRKG 371 Query: 381 KVRTINVTVGEMKQAKSDAKTGKSDDQGR----LGLAVRPLNKDEQAQLGGQKGLLVEDA 436 +R +N+ V E++ K K K + LGL V LN + +L G+L+E Sbjct: 372 AMRDLNLVVTELEADKVVKKEDKKPKAEQVANALGLIVSDLNAAQLKELKIDGGILIEAT 431 Query: 437 SGPAAVAGIQSGDVILALNGTPVTSVAQLRKLAS--EAGKNVALLVERGDEKIFV---PL 491 G AA AG++ GD+IL LN T + Q L + + K LLV RGD FV PL Sbjct: 432 EGAAARAGLRGGDIILRLNNTDIKDARQFNGLVAKLDTKKTTLLLVRRGDSSQFVTIKPL 491 Query: 492 A 492 A Sbjct: 492 A 492 >gi|152980821|ref|YP_001354055.1| periplasmic serine protease [Janthinobacterium sp. Marseille] Length = 453 Score = 374 bits (961), Expect = e-105, Method: Compositional matrix adjust. Identities = 208/433 (48%), Positives = 282/433 (65%), Gaps = 26/433 (6%) Query: 59 VAAATDFSGIVQRYGPAVVNISVTGKARKVADDDDNGMDPNDPFFEFFKHFGPQLQMPQQ 118 + +A DFS + + YGPAVVNI V AR A +L+ PQ Sbjct: 36 LWSAPDFSALARTYGPAVVNIGV---ARDQAQ---------------------RLRSPQN 71 Query: 119 PRIMHGLGSGFIISSDGLILTNAHVVDGAQEVVVKLTDRREFKAKVLGIDKQSDIAVIRI 178 LGSGFI+S+DG ILTNAHVV ++ VKL DRREFKA+++G D +D+A+++I Sbjct: 72 ANEEASLGSGFIVSTDGYILTNAHVVARGTQISVKLPDRREFKARLIGSDAVADVALLKI 131 Query: 179 DAKNLPTVQIGDPSKVKVGQPVLAIGSPYGFDNTATAGIVSAKSRSLPDDNYVPFIQTDV 238 DA+ LPTV+IG+P+KV+VG LAIGSP+GF N+ATAGI+SA R LP +Y+PF+QTDV Sbjct: 132 DAQGLPTVRIGNPNKVEVGDWALAIGSPFGFSNSATAGIISATRRILPGADYIPFLQTDV 191 Query: 239 AVNPGNSGGPLFDLNGQVIGINSQIYSQTGGFQGLSFSIPIDVAMKVEQQLVTHGKVTRG 298 VNPGNSGGPLF+ G+VIGINS+IYS +GG+QGLSF+IPID AM++++QL G VTRG Sbjct: 192 PVNPGNSGGPLFNQYGEVIGINSRIYSNSGGYQGLSFAIPIDAAMRIKEQLQDKGAVTRG 251 Query: 299 RLGVSVQDLNQALSESFGLKKAEGALVSSVEKGSPADKAGLEAGDVILSFDGHAIDHSVD 358 R+GVSVQ+++Q L+ESF L + GALVS VE+G+ AD+AGL++GDVIL G+ + S D Sbjct: 252 RIGVSVQEVSQPLAESFHLPRPAGALVSYVERGAAADRAGLKSGDVILQVKGNEVLQSAD 311 Query: 359 LPTLVGDTAPGSTKPMQVMRAGKVRTINVTVGEMKQAKSDAKTGKSDDQGRLGLAVRPLN 418 + D+APG ++V R K + V A + + LGL VRPL Sbjct: 312 ALIFIADSAPGEETVLKVWREKKALLLTVVPDRFDALP--APKIEPELATPLGLVVRPLF 369 Query: 419 KDEQAQLGGQKGLLVEDASGPAAVAGIQSGDVILALNGTPVTSVAQLRKLASEAGKNVAL 478 EQ L GLLV+ + AA AG++ GDVI+A+NG V+++ L A AL Sbjct: 370 PQEQLVLRIDGGLLVQRINAAAARAGVKVGDVIMAVNGRTVSTIQGLADEVGVADGAAAL 429 Query: 479 LVERGDEKIFVPL 491 L++RG ++F+P+ Sbjct: 430 LIQRGAARLFIPI 442 >gi|152981007|ref|YP_001354965.1| htra-like serine protease signal peptide protein [Janthinobacterium sp. Marseille] Length = 391 Score = 255 bits (652), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 158/398 (39%), Positives = 233/398 (58%), Gaps = 27/398 (6%) Query: 5 IIFVRNTLAVMIAAVVGGSYVYFRGADLPSAHAAALNAPLVASNSAPTAPAGPVVAAATD 64 I+F+ TL A+ V G R S + L AP N+APT + Sbjct: 18 ILFIVTTLKPEWASGVLGGAQKVRS----STSVSMLEAP---PNTAPTEGS--------- 61 Query: 65 FSGIVQRYGPAVVNISVTGKARKVADDDDNGMDPNDPFFEFFKHFGPQLQMPQQPRIMHG 124 F + P+VVNI + + + + MD DPFF K FG + Q+ ++ Sbjct: 62 FRDAAKLAMPSVVNIFTS---KTPSPSQNPFMD--DPFFR--KFFGDRFDEQQEKQV--S 112 Query: 125 LGSGFIISSDGLILTNAHVVDGAQEVVVKLTDRREFKAKVLGIDKQSDIAVIRIDAKNLP 184 LGSG I+S++G ILTN HVV+ A E+ V LTD R+ AKV+G D ++D+AVI+I+ NLP Sbjct: 113 LGSGVIVSAEGYILTNNHVVEAADEIEVALTDGRKAIAKVVGSDPETDLAVIKINLDNLP 172 Query: 185 TVQIGDPSKVKVGQPVLAIGSPYGFDNTATAGIVSAKSRSLPD--DNYVPFIQTDVAVNP 242 + +G + +VG VLAIG+P+G T T GI+SA R+ D + FIQTD A+NP Sbjct: 173 AITLGRVEEARVGDVVLAIGNPFGVGQTVTMGIISALGRNHLGILDAFENFIQTDAAINP 232 Query: 243 GNSGGPLFDLNGQVIGINSQIYSQTGGFQGLSFSIPIDVAMKVEQQLVTHGKVTRGRLGV 302 GNSGG L D NG ++GIN+ IYS++GG G+ F+IP+ V ++ +G V RG +GV Sbjct: 233 GNSGGALIDANGNLLGINTAIYSRSGGSLGIGFAIPVTTVKSVMDAIIKNGHVVRGYIGV 292 Query: 303 SVQDLNQALSESFGLKKAEGALVSSVEKGSPADKAGLEAGDVILSFDGHAIDHSVDLPTL 362 QD+ L+ESFGLKK+ GA+++ V KG PADKAG++ GD+++S +G A+ D+ Sbjct: 293 EPQDITPELAESFGLKKSTGAIIAGVLKGGPADKAGMQPGDILVSVEGKAVTDMADMLNQ 352 Query: 363 VGDTAPGSTKPMQVMRAGKVRTINVTVGEMKQAKSDAK 400 + +PG+ + V+R + T+N+TVG +A + A+ Sbjct: 353 IAQLSPGTKAKVVVLRRNQENTLNITVGMRPKAPARAE 390 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.315 0.134 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,073,715 Number of extensions: 45753 Number of successful extensions: 217 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 206 Number of HSP's successfully gapped: 3 Length of query: 494 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 407 Effective length of database: 899,382 Effective search space: 366048474 Effective search space used: 366048474 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.5 bits) S2: 131 (55.1 bits)