BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4261.p
         (173 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980746|ref|YP_001353246.1| NAD(P)H dehydrogenase (quinone)...   106   7e-25
gi|152983027|ref|YP_001352580.1| NAD(P)H2 dehydrogenase [Janthin...   103   6e-24

>gi|152980746|ref|YP_001353246.1| NAD(P)H dehydrogenase (quinone)
           [Janthinobacterium sp. Marseille]
          Length = 187

 Score =  106 bits (265), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 58/169 (34%), Positives = 88/169 (52%), Gaps = 2/169 (1%)

Query: 3   KVLILYAHPAAELSRTNRLMLQAAARLPE-VQIHDLYERYPDFHIDVEHEQQLLTQAELI 61
           K L++  HP    S  N+  LQ   + PE V IH L+E+YPD  IDV  EQ+LL + + I
Sbjct: 5   KTLVIVTHPDIHKSIINKRWLQELQKNPELVTIHQLHEQYPDGKIDVAAEQKLLLEHDTI 64

Query: 62  VMQHPIHWYSMPALQKQWLDQVLARGWAFGHDGHALHGKRFWLVASTGGEDASYRSDGRH 121
           ++Q P++W+S P L KQW D+VL  G+A+G     L GKR     S G ++  YR  GR+
Sbjct: 65  ILQFPLYWFSTPPLLKQWQDEVLTHGFAYGRGTEKLAGKRIGAAVSAGIKEVDYRKSGRY 124

Query: 122 GHPFADFLPPYQQTARLCGMSWVEPLILHGAHH-VPPVEFQHHVQRYLE 169
            +   + L P + T       ++     +G    +   E   +  +YL+
Sbjct: 125 HYTLEELLRPLRVTIEYISAEYLPAFACYGIESGISEEELDANAAQYLQ 173


>gi|152983027|ref|YP_001352580.1| NAD(P)H2 dehydrogenase
           [Janthinobacterium sp. Marseille]
          Length = 183

 Score =  103 bits (257), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 56/176 (31%), Positives = 91/176 (51%), Gaps = 4/176 (2%)

Query: 1   MPKVLILYAHPAAELSRTNRLMLQAAAR-LPEVQIHDLYERYPDFHIDVEHEQQLLTQAE 59
           + K L++  HP  E S  N+   + A R L  V +H +Y+RYPD  IDV  EQ+LL   +
Sbjct: 3   LNKTLVIVTHPDIENSVVNKRWAEEAHRNLDFVTVHSIYDRYPDMKIDVGAEQKLLLNYD 62

Query: 60  LIVMQHPIHWYSMPALQKQWLDQVLARGWAFG--HDGHALHGKRFWLVASTGGEDASYRS 117
           +IV Q P++W+S P L K W D+VL + +++G   +   L GKR  +  S G ++  +  
Sbjct: 63  VIVFQFPLYWFSTPPLLKMWFDEVLTQEFSYGRQENERNLSGKRIGIAVSAGIKEIDFTK 122

Query: 118 DGRHGHPFADFLPPYQQTARLCGMSWVEPLILHGAHH-VPPVEFQHHVQRYLEGLQ 172
           DGR+     D+L P   T        +     +G    +   + +  V++YL+ L+
Sbjct: 123 DGRYEGTLTDYLRPLISTMDYISAKPLPVFAYYGVEFGISNDDLESSVEQYLQFLK 178


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.324    0.138    0.457 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 463,835
Number of extensions: 19186
Number of successful extensions: 78
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 2
Length of query: 173
Length of database: 1,221,021
Length adjustment: 77
Effective length of query: 96
Effective length of database: 936,352
Effective search space: 89889792
Effective search space used: 89889792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 126 (53.1 bits)