BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4260.p
         (381 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981472|ref|YP_001355118.1| glutamine amidotransferase, cla...   493   e-141

>gi|152981472|ref|YP_001355118.1| glutamine amidotransferase, class
           II [Janthinobacterium sp. Marseille]
          Length = 352

 Score =  493 bits (1270), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 254/382 (66%), Positives = 290/382 (75%), Gaps = 31/382 (8%)

Query: 1   MSDIQDSEANLPPDRTSTSTASGAAKPVSADASGAAAASQNPVQPQVSTDHAVTPVQPGP 60
           MSD  +S++NLPP      + S   + VS+  S    AS   V+PQV           G 
Sbjct: 1   MSD--NSDSNLPP-----VSKSVPPEAVSSSESVPPPASTPSVEPQV-----------GA 42

Query: 61  GAQPAAEATQAQAHAQASPQAQQSPYSSLPPPPHHAGDAPWAQTWRFLTARLRQMSDKAG 120
              PA+  T+      + P A Q P            D PW QTWR   ARL+ +S++ G
Sbjct: 43  VPSPASFKTKPDFGKHSVP-AYQMP-----------DDTPWKQTWRIFQARLQSLSEQVG 90

Query: 121 RRVMQRTLKIGVSARIFHPESGAKGLRSKTLQYLEESIAQWVMSRDVLVFMIPTVNTNGL 180
           RR+ QRTLKIGVSARIFHPESGAKGL++KTLQYLEESIAQWVMSRDVLV MIPTVNTNGL
Sbjct: 91  RRLTQRTLKIGVSARIFHPESGAKGLQAKTLQYLEESIAQWVMSRDVLVLMIPTVNTNGL 150

Query: 181 VHPSNIRLRDYAKHLDGLVLQGGADVSPQSYAQAATRPEWSGDRVRDMYELELLHEFIEA 240
           +HPS IRLRDYAKHLDGLVLQGGADV+PQ+Y+Q ATRPEWSGD  RDMYELELLHEFIEA
Sbjct: 151 LHPSKIRLRDYAKHLDGLVLQGGADVAPQTYSQTATRPEWSGDSSRDMYELELLHEFIEA 210

Query: 241 GKPVLGICRGCQLINVAFGGTLYQDIASDVPTAIPHVNEQYDSNYHALHFPQGSSLAGMV 300
           GKPVLGICRGCQLINVAFGGTLYQDIA+DVP+A+ HVN+ YDS+ H + FP GSSLA + 
Sbjct: 211 GKPVLGICRGCQLINVAFGGTLYQDIATDVPSAMLHVNDLYDSHRHEIAFPPGSSLASLF 270

Query: 301 KTENA-MVNSIHHQAVRDLGRDLSVEAVSGPDQIVEAIRYRKAPFVMGLQWHPEFHRAGG 359
               + +VNSIHHQAVRDLGRDL++EA+S  D IVEA+RY KA FVMGLQWHPEFHRAGG
Sbjct: 271 PGHTSPLVNSIHHQAVRDLGRDLTIEAISQTDNIVEAVRYTKARFVMGLQWHPEFHRAGG 330

Query: 360 AELLDCTPILDSFLRAARETRF 381
           +ELLDCTPILD+FLRAARETRF
Sbjct: 331 SELLDCTPILDNFLRAARETRF 352


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.316    0.130    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 770,534
Number of extensions: 29996
Number of successful extensions: 80
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 296
Effective length of database: 906,776
Effective search space: 268405696
Effective search space used: 268405696
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)