BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4258.p
         (135 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982110|ref|YP_001355263.1| hypothetical protein mma_3573 [...   132   6e-33

>gi|152982110|ref|YP_001355263.1| hypothetical protein mma_3573
           [Janthinobacterium sp. Marseille]
          Length = 130

 Score =  132 bits (333), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 64/129 (49%), Positives = 90/129 (69%)

Query: 7   QDQAAPAAHANPGLTAGLLGLAKNLLGLIISRIELASLEMSEIGANLVRFAVIFVLAAVA 66
           + Q   ++   PGL +G + LAKN+ GL++SRIELA+LE++E+ AN ++   +FVL A+ 
Sbjct: 2   EQQTPRSSDFRPGLVSGAVNLAKNMFGLLMSRIELAALELAEVRANALKLVALFVLGAIV 61

Query: 67  LWFAIAFWSVLIVMLAWDTWGWKILALLGFIFSVATAGLVWYARSVLLQGKLSLPQTMGE 126
             FAI +WS LIV L+W T GWKIL +L  IF+    G++ Y +S+L +GKLS+P TM E
Sbjct: 62  ALFAIGYWSALIVYLSWPTLGWKILLILAIIFTAVAVGILLYVQSLLREGKLSMPATMAE 121

Query: 127 LRKDRDALL 135
           LR D DALL
Sbjct: 122 LRNDHDALL 130


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.327    0.137    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 205,565
Number of extensions: 5284
Number of successful extensions: 33
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 1
Length of query: 135
Length of database: 1,221,021
Length adjustment: 74
Effective length of query: 61
Effective length of database: 947,443
Effective search space: 57794023
Effective search space used: 57794023
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 124 (52.4 bits)