BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4256.p
         (239 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981732|ref|YP_001352854.1| OmpA family protein [Janthinoba...   248   2e-67
gi|152982971|ref|YP_001354367.1| outer membrane protein A precur...    75   4e-15

>gi|152981732|ref|YP_001352854.1| OmpA family protein
           [Janthinobacterium sp. Marseille]
          Length = 229

 Score =  248 bits (633), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 151/214 (70%), Positives = 177/214 (82%), Gaps = 2/214 (0%)

Query: 1   MKKLSIAAIAGVLALSGCADMSPTQRGTATGAGIGAGIGGIIGAATGGGGGGRALGGAAI 60
           M+ L I ++A VLALSGCA+MS T+RGTA GAGIGAG+G ++G  TGG       GGAAI
Sbjct: 1   MRTLMIGSLAAVLALSGCANMSETERGTAQGAGIGAGVGALLGGITGGSRN--IAGGAAI 58

Query: 61  GGAIGAVAGNIWSNRMENQKRAMEQATQGTGVQVTQTADNRLKLEIPSDISFDTGRADIK 120
           GG IGAVAGN+WS++MENQKRAMEQATQGTGVQV+QT+DNRLKLEIPSDISF TGR+DI 
Sbjct: 59  GGVIGAVAGNVWSSKMENQKRAMEQATQGTGVQVSQTSDNRLKLEIPSDISFATGRSDIN 118

Query: 121 PEMRPVLDRFAATLVENPATTVTIVGHTDNTGSDAINDPLSQERAARTRDYLTSRGVAAN 180
           P ++P+LDRFA  LV+NP  TVTI+GHTD+TGSDAIN+PLS +RA+RTRDYLT RGVA  
Sbjct: 119 PSLQPILDRFATGLVDNPTATVTIIGHTDSTGSDAINNPLSFDRASRTRDYLTGRGVAPQ 178

Query: 181 RFTIMGRGSHEPLVPNTSDANRAKNRRVEIFVAE 214
           R  + GRGSHEP+  N   A RA+NRRVEIFVAE
Sbjct: 179 RIYVDGRGSHEPIASNADAAGRARNRRVEIFVAE 212


>gi|152982971|ref|YP_001354367.1| outer membrane protein A precursor
           [Janthinobacterium sp. Marseille]
          Length = 206

 Score = 75.1 bits (183), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 41/97 (42%), Positives = 54/97 (55%)

Query: 116 RADIKPEMRPVLDRFAATLVENPATTVTIVGHTDNTGSDAINDPLSQERAARTRDYLTSR 175
           +A +KPE +  LD   + L       +  VGHTD+ GSDA N  LS  RA   + YL  +
Sbjct: 105 KAVLKPEGKAKLDDLTSKLNGLNLEVIIAVGHTDSVGSDAYNQKLSVRRAEAVKAYLVGK 164

Query: 176 GVAANRFTIMGRGSHEPLVPNTSDANRAKNRRVEIFV 212
           GV A R    G+G  +P+  N + A RA+NRRVEI V
Sbjct: 165 GVDAKRVYTEGKGEKQPVATNKTAAGRAQNRRVEIEV 201


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.314    0.132    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 346,758
Number of extensions: 11306
Number of successful extensions: 34
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 3
Length of query: 239
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 158
Effective length of database: 921,564
Effective search space: 145607112
Effective search space used: 145607112
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 128 (53.9 bits)