BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4253.p (249 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981549|ref|YP_001352605.1| glucose-1-dehydrogenase, (3-oxo... 67 9e-13 gi|152982667|ref|YP_001354167.1| glucose-1-dehydrogenase, (3-oxo... 62 3e-11 gi|152981530|ref|YP_001353550.1| short chain dehydrogenase/reduc... 57 1e-09 gi|152982900|ref|YP_001352586.1| short chain dehydrogenase [Jant... 56 3e-09 gi|152981443|ref|YP_001353048.1| 3-oxoacyl-[acyl-carrier protein... 55 3e-09 >gi|152981549|ref|YP_001352605.1| glucose-1-dehydrogenase, (3-oxoacyl-(acyl carrier protein) reductase) [Janthinobacterium sp. Marseille] Length = 254 Score = 67.0 bits (162), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 44/126 (34%), Positives = 62/126 (49%), Gaps = 15/126 (11%) Query: 119 GNGIVMVSSI-ADHYIAPEQDLGYHVSKAGLVQLARFYALQLGPLGLRVNVVSPCVVIKE 177 G IV S+ A I Y + AG+ L R A++L P +R+N V+P VV Sbjct: 131 GGAIVQTGSLWAIQAIGATPSAAYSAANAGVHALTRNLAIELAPFNIRINTVAPAVV--- 187 Query: 178 AAQEYYRQNSWITD--------RFEHFIPLRRAGSSQDIINAILFLTGAQSSYITGQNIV 229 E N+++TD F F PL R G D+ A+LFL + +S+ITG + Sbjct: 188 ---ETPVYNTFMTDDQVKDTLPSFNAFHPLGRNGQPADVAEAMLFLASSSASWITGTVLP 244 Query: 230 VDGGLT 235 VDGG+T Sbjct: 245 VDGGVT 250 >gi|152982667|ref|YP_001354167.1| glucose-1-dehydrogenase, (3-oxoacyl-(acyl carrier protein) reductase) [Janthinobacterium sp. Marseille] Length = 258 Score = 62.0 bits (149), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 44/125 (35%), Positives = 60/125 (48%), Gaps = 15/125 (12%) Query: 119 GNGIVMVSSI-ADHYIAPEQDLGYHVSKAGLVQLARFYALQLGPLGLRVNVVSPCVVIKE 177 G IV S+ A I Y + AG+ L R A++L +R+N V+P VV Sbjct: 134 GGAIVQTGSLWALQAIGATPSAAYSAANAGVHALTRNLAIELAASNIRINTVAPGVV--- 190 Query: 178 AAQEYYRQNSWITD--------RFEHFIPLRRAGSSQDIINAILFLTGAQSSYITGQNIV 229 E N+++TD F F PL R G D+ AILFL A +S+ITG + Sbjct: 191 ---ETPVYNTFMTDDQVKATLPAFNAFHPLGRNGQPADVAEAILFLASANASWITGTVLS 247 Query: 230 VDGGL 234 VDGG+ Sbjct: 248 VDGGV 252 >gi|152981530|ref|YP_001353550.1| short chain dehydrogenase/reductase family oxidoreductase [Janthinobacterium sp. Marseille] Length = 249 Score = 57.0 bits (136), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 4/94 (4%) Query: 141 YHVSKAGLVQLARFYALQLGPLGLRVNVVSPCVVIKEAAQEYYRQNSWITDRFEHFIPLR 200 Y +SKA +V L + A LGP G+ VN V P V + NS D + + + Sbjct: 158 YAMSKAAIVGLTKGLARDLGPRGITVNNVQPGPV----DTDMNPANSDFADTLKGLMAIG 213 Query: 201 RAGSSQDIINAILFLTGAQSSYITGQNIVVDGGL 234 R G ++I + + +L G ++ YITG ++ +DGG Sbjct: 214 RYGKDEEIASFVAYLAGPEAGYITGASLTIDGGF 247 >gi|152982900|ref|YP_001352586.1| short chain dehydrogenase [Janthinobacterium sp. Marseille] Length = 278 Score = 55.8 bits (133), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 42/120 (35%), Positives = 60/120 (50%), Gaps = 2/120 (1%) Query: 117 AQGNG-IVMVSSIADHYIAPEQDLGYHVSKAGLVQLARFYALQLGPLGLRVNVVSPCVVI 175 AQG+G I+ +SS+A + Y SK + L + AL+ G+RVN V+P V Sbjct: 158 AQGSGSIINLSSVAGKVGIAGASV-YVASKHAVEGLTKSAALEGAAAGVRVNAVAPGPVA 216 Query: 176 KEAAQEYYRQNSWITDRFEHFIPLRRAGSSQDIINAILFLTGAQSSYITGQNIVVDGGLT 235 E + + F IP RA + +I I+FL + SY+TGQ+I VDGG T Sbjct: 217 TEMLDRFVGGSEENKAGFLATIPAGRAATPDEIAQTIVFLASDKVSYLTGQSIAVDGGHT 276 >gi|152981443|ref|YP_001353048.1| 3-oxoacyl-[acyl-carrier protein] reductase [Janthinobacterium sp. Marseille] Length = 247 Score = 55.5 bits (132), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 64/244 (26%), Positives = 109/244 (44%), Gaps = 27/244 (11%) Query: 7 LVVGGSKGTGLALVEHLLADGQRVSVLARS-ACALPPSPLL----TWLPVDVTDTVALHT 61 LV G S+G G A+ + L G +V A S + A S L + +DV D Sbjct: 12 LVTGASRGIGRAIAQELAKLGAKVIGTATSESGAAAISEYLGNGGKGVVLDVNDAARSVA 71 Query: 62 ALDACVAGQGKI----DSAVFMQRH---RASDDAFETDLAVALTA----TRATIDHLVAR 110 +D G + ++A Q R D+ +++ +A LTA +RA + ++ Sbjct: 72 LIDEIQKEFGAVSILVNNAGITQDQLAMRMKDEEWDSVIATNLTAVGRLSRAVLRGMMKA 131 Query: 111 KHFSGSAQGNGIVMVSSIADHYIAPEQDLGYHVSKAGLVQLARFYALQLGPLGLRVNVVS 170 K I+ ++S+ Q + Y +KAG+ ++R A ++G + VN ++ Sbjct: 132 KTGR-------IINITSVVGSSGNAGQ-MNYAAAKAGVAGMSRALAREIGSRNITVNCIA 183 Query: 171 PCVVIKEAAQEYYRQNSWITDRFEHFIPLRRAGSSQDIINAILFLTGAQSSYITGQNIVV 230 P + + + Q I + +PL R G +DI A+ FL Q+SYITG + V Sbjct: 184 PGFIDTDMTKTLSEQQ--IAALLQQ-VPLGRLGVPEDIAAAVSFLASPQASYITGTTLHV 240 Query: 231 DGGL 234 +GG+ Sbjct: 241 NGGM 244 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.135 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 579,174 Number of extensions: 22297 Number of successful extensions: 104 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 103 Number of HSP's successfully gapped: 9 Length of query: 249 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 168 Effective length of database: 921,564 Effective search space: 154822752 Effective search space used: 154822752 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)