BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4250.p
         (264 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979925|ref|YP_001352335.1| mannose-1-phosphate guanylyltra...   105   2e-24
gi|152982188|ref|YP_001352105.1| nucleotidyl transferase [Janthi...    80   1e-16
gi|152980566|ref|YP_001353942.1| dTDP-glucose pyrophosphorylase ...    75   5e-15

>gi|152979925|ref|YP_001352335.1| mannose-1-phosphate
           guanylyltransferase [Janthinobacterium sp. Marseille]
          Length = 385

 Score =  105 bits (263), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/250 (30%), Positives = 128/250 (51%), Gaps = 26/250 (10%)

Query: 1   MRALLLAAGLGTRLRPLTDFLPKCLVPIAGRPLLDYWIETLLRQGVEDILINTHYRADLV 60
           M+A++LAAG GTR++PLT  LPK ++PI G+P+++Y +E L++ G+ +I++N  Y    +
Sbjct: 1   MKAMILAAGKGTRVQPLTYELPKPMIPILGKPVMEYLVEHLVKYGIHEIMVNVSYLHQKI 60

Query: 61  ERYIA-ASTWCDRVTLVHE----------PQLLGTAGTALTHRQFFG--EQPFLLAHADN 107
           E Y      +  ++    E          P+ +G+AG     ++F G  ++  L+   D 
Sbjct: 61  EDYFGEGQRFGAQIGYSFEGYMTDEGEVMPKPIGSAGGLKKIQEFGGFFDETTLVICGDA 120

Query: 108 LTRFDCRDFLSTHRNRPHGTALTMMLFETPDPQSC--GIVELDTSGVVQVFHEKQPNPP- 164
           L   D +  L  HR +  G  ++++  E P  ++   G+V  D  G V  F EK P P  
Sbjct: 121 LIDLDIKSALFEHRRK--GAMVSIITKEVPLEKASDYGMVVTDEEGRVLSFQEK-PKPED 177

Query: 165 --GNLANAAVYVVEPEVLTWLASLGRHEIDFSTEVIPRYLGH-IATFANTSYHR--DIGT 219
              NLA+  +Y+ EPEVL  + S    E D  +++ P  +   +  FA   +    DIG 
Sbjct: 178 ALSNLASTGIYIFEPEVLDLIPS--DVEFDIGSQLFPLLVEKGVPFFAQKRFFNWIDIGN 235

Query: 220 VQSWAQAQRD 229
           V+ + Q  ++
Sbjct: 236 VKDYWQVSQN 245


>gi|152982188|ref|YP_001352105.1| nucleotidyl transferase
           [Janthinobacterium sp. Marseille]
          Length = 238

 Score = 80.5 bits (197), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/107 (40%), Positives = 63/107 (58%), Gaps = 1/107 (0%)

Query: 1   MRALLLAAGLGTRLRPLTDFLPKCLVPIAGRPLLDYWIETLLRQGVEDILINTHYRADLV 60
           M+A++ AAG G R+RPLTD  PK L+ + GRPL+ + I  L+R G+ DI+IN  +  +L+
Sbjct: 1   MKAMIFAAGRGERMRPLTDTCPKPLLTVRGRPLIVWHILNLVRAGITDIVINHAHLGNLI 60

Query: 61  ERYIAAST-WCDRVTLVHEPQLLGTAGTALTHRQFFGEQPFLLAHAD 106
           E  +   T +  R++   E   L TAG     R   G++PFL   AD
Sbjct: 61  EETLGDGTQFGARISYSAEGTALETAGGVAKARHLLGDEPFLALAAD 107


>gi|152980566|ref|YP_001353942.1| dTDP-glucose pyrophosphorylase
           [Janthinobacterium sp. Marseille]
          Length = 300

 Score = 75.1 bits (183), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 96/209 (45%), Gaps = 13/209 (6%)

Query: 2   RALLLAAGLGTRLRPLTDFLPKCLVPIAGRPLLDYWIETLLRQGVEDI-LINTHYRADLV 60
           + ++LA G G RL P T  + K L+P+  +P++ Y + TL+  G+ DI LI+T       
Sbjct: 11  KGIILAGGSGARLYPATVAISKQLLPVYDKPMIYYPLTTLMLAGIRDILLISTPQDTPRF 70

Query: 61  ERYIA-ASTWCDRVTLVHEPQLLGTAGTALTHRQFFGEQPFLLAHADNLTR---FDCRDF 116
           ++ +   S W   ++   +P   G A   +  R F G  P  L   DNL     FD +  
Sbjct: 71  QQLLKDGSQWGINLSYAVQPAPEGLAQAFIIGRHFIGNDPSALILGDNLYYGHAFDQQ-- 128

Query: 117 LSTHRNRPHGTALTMMLFETPDPQSCGIVELDTSGVVQVFHEKQPNPPGNLANAAVYVVE 176
           L     R HG+  T+  +   DP+  G+VE D         EK   P  N A   +Y  +
Sbjct: 129 LMQASARIHGS--TVFAYHVQDPERYGVVEFDDKHQAVSIEEKPLVPKSNYAVTGLYFYD 186

Query: 177 PEVLTWLASL---GRHEIDFSTEVIPRYL 202
            +V    AS+   GR E++  T+V   YL
Sbjct: 187 NQVCDIAASIQPSGRGELEI-TDVNRAYL 214


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.136    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 583,316
Number of extensions: 22907
Number of successful extensions: 79
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 3
Length of query: 264
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 182
Effective length of database: 917,867
Effective search space: 167051794
Effective search space used: 167051794
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)