BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4249.p (351 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980628|ref|YP_001351911.1| Zn-dependent alcohol dehydrogen... 144 6e-36 gi|152980956|ref|YP_001352862.1| bifunctional glutathione-depend... 142 3e-35 >gi|152980628|ref|YP_001351911.1| Zn-dependent alcohol dehydrogenases, class III [Janthinobacterium sp. Marseille] Length = 368 Score = 144 bits (364), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 112/358 (31%), Positives = 176/358 (49%), Gaps = 28/358 (7%) Query: 8 RAAILAQLQQPLIVDEVELPPQLEVGQVLVKIGVSGVCGSQLGEIDGAKGEDKYLPHLLG 67 +AA+ + PL ++EV+L + G+VLV+I +G+C + + GA E + P +LG Sbjct: 4 KAAVAWKAGAPLTIEEVDLAGP-KAGEVLVEIKATGICHTDYYTLSGADPEGIF-PAILG 61 Query: 68 HEASGIVQEVGPGVRFVKPGDHVVLHW---------------------RKSQGIESLP-- 104 HE +G+V +VGPGV +K DHV+ + R +QG +P Sbjct: 62 HEGAGVVVDVGPGVTTLKKDDHVIPLYTPECRQCKFCLSRKTNLCQAIRSTQGRGLMPDA 121 Query: 105 -PKYTWRGKTLNAGL-IATFNEYAIVSENRVTRIDPSSDMDVAALFGCAVTTGFGVAENN 162 +++ K L + +TF+ Y +V E + +I + D A GC VTTG G + Sbjct: 122 TSRFSLDSKPLFHYMGTSTFSNYIVVPEIALAKIREDAPFDKACYIGCGVTTGVGAVVFS 181 Query: 163 ADIRLGESVVVFGAGGVGLNIIQAASLRSAYPIIAVDLHEGRLELAKQVGATHLINASKV 222 A + G +VVVFG GG+GLN+IQAA + A II VD++ GR+E+A++ G TH +N +V Sbjct: 182 AKVEAGANVVVFGLGGIGLNVIQAAKMVGADKIIGVDINPGRIEMARKFGMTHFVNPKEV 241 Query: 223 DARTALVELMGKQGIDVFIDNTGQPPIIEMGYELT-KAQGRVVLVGVPRAGRNISIYSLP 281 + + + G D + G + E K G+ ++GV AG+ IS Sbjct: 242 ENVVDHIVQLTDGGADYSFECIGNTTTMRQALECCHKGWGQSFIIGVAAAGQEISTRPFQ 301 Query: 282 LHFEKTISGSHGGETVPHVDIPRYTKLLDAGLIQLKPLITEHFKLDDINVAIERMRSG 339 L + GS G D+P+ G + + LIT L+ IN + M+SG Sbjct: 302 LVTGREWKGSAFGGARGRTDVPKIVDWYMEGKLNIDDLITHTLPLERINEGFDLMKSG 359 >gi|152980956|ref|YP_001352862.1| bifunctional glutathione-dependent formaldehyde dehydrogenase /alcohol dehydrogenase class III oxidoreductase protein [Janthinobacterium sp. Marseille] Length = 368 Score = 142 bits (358), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 117/358 (32%), Positives = 174/358 (48%), Gaps = 28/358 (7%) Query: 8 RAAILAQLQQPLIVDEVELPPQLEVGQVLVKIGVSGVCGSQLGEIDGAKGEDKYLPHLLG 67 +AA+ + Q L ++EVEL E G+VLV+I +G+C + + GA E + P +LG Sbjct: 4 KAAVAWKAGQALTIEEVELGGPRE-GEVLVEIKATGICHTDYYTLSGADPEGIF-PAILG 61 Query: 68 HEASGIVQEVGPGVRFVKPGDHVVLHW---------------------RKSQGIESLP-- 104 HE +G+V EVGPGV+ +K DHV+ + R +QG +P Sbjct: 62 HEGAGVVVEVGPGVKSLKKDDHVIPLYTPECRECKFCLSRKTNLCQKIRSTQGRGLMPDA 121 Query: 105 -PKYTWRGKTLNAGL-IATFNEYAIVSENRVTRIDPSSDMDVAALFGCAVTTGFGVAENN 162 +++ GK L + +TF+ Y +V E + +I + D GC VTTG G Sbjct: 122 TSRFSIDGKPLFHYMGTSTFSNYIVVPEIALAKIREDAPFDKVCYIGCGVTTGVGAVLFT 181 Query: 163 ADIRLGESVVVFGAGGVGLNIIQAASLRSAYPIIAVDLHEGRLELAKQVGATHLINASKV 222 A + G +VVVFG GG+GLN+IQAA + A II VDL+ R +A++ G TH IN SKV Sbjct: 182 AKVEAGANVVVFGLGGIGLNVIQAAKMVGADKIIGVDLNPAREAMARKFGMTHFINPSKV 241 Query: 223 DARTALVELMGKQGIDVFIDNTGQPPIIEMGYELT-KAQGRVVLVGVPRAGRNISIYSLP 281 + + + G D + G + E K G+ +++GV AG IS Sbjct: 242 ENVVDAIVQLTDGGADYSFECIGNVHTMRQALECCHKGWGQSIVIGVAEAGAEISTRPFQ 301 Query: 282 LHFEKTISGSHGGETVPHVDIPRYTKLLDAGLIQLKPLITEHFKLDDINVAIERMRSG 339 L + GS G D+P+ G + + LIT L+ IN + M+SG Sbjct: 302 LVTGREWKGSAFGGARGRTDVPKIVDWYMEGKLNIDDLITHTLPLERINEGFDLMKSG 359 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.139 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 851,566 Number of extensions: 38531 Number of successful extensions: 138 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 134 Number of HSP's successfully gapped: 5 Length of query: 351 Length of database: 1,221,021 Length adjustment: 84 Effective length of query: 267 Effective length of database: 910,473 Effective search space: 243096291 Effective search space used: 243096291 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)