BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4245.p
         (310 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979790|ref|YP_001352021.1| 1-deoxy-D-xylulose-5-phosphate ...    94   1e-20
gi|152980222|ref|YP_001352521.1| transketolase [Janthinobacteriu...    57   2e-09

>gi|152979790|ref|YP_001352021.1| 1-deoxy-D-xylulose-5-phosphate
           synthase [Janthinobacterium sp. Marseille]
          Length = 621

 Score = 93.6 bits (231), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 95/309 (30%), Positives = 148/309 (47%), Gaps = 14/309 (4%)

Query: 3   NAFADEITKLGSSDPRVVLLSGDI--GNKLFDKFKAANTGRFLNCGIAEANMMGVAAGMA 60
           + F D +  + ++D R+V ++  +  G+ + + F+     R+ + GIAE + +  AAGMA
Sbjct: 314 SVFGDWLCDMAAADKRLVGITPAMREGSGMVE-FERRFPDRYYDVGIAEQHAVTFAAGMA 372

Query: 61  LSGLRPVIYTITPFTTTRCFEQIRVDACYHNVPVIIVGTGSGLSYAELGPTHHSCEDLAI 120
             GL+PV+   + F   R ++Q+  D    N+ V      SGL  A+ G TH    D+A 
Sbjct: 373 CEGLKPVVAIYSTFLQ-RGYDQLIHDVALQNLDVTFALDRSGLVGAD-GATHAGNYDIAY 430

Query: 121 MRVLPNMTVLAPADEVELRQCLRAALKLNGPVYIRIGKKG--EQIVPKKDEHFEIGRAIN 178
           +R +PNM V+A +DE E RQ L       GP  +R  + G     V        +G    
Sbjct: 431 LRCIPNMVVMAASDENECRQMLSTGFDYQGPAAVRYPRGGGIGAKVGTDLATIPLGTGEI 490

Query: 179 VRAGDDVCLIGAGTLLPTVMAAAELLQARGISARVESFHTIKPLDEANLQQAFAGYAVVA 238
            R G  + ++  GT++   ++A E L      A V +   IKPLD   L++  A +  + 
Sbjct: 491 KREGKGIAILAFGTMVAPSLSAGEEL-----DATVANMRFIKPLDVELLKRLAATHDALV 545

Query: 239 VVEEHSRIGGLGGAIAEWLAQQEPMKGRLLGFGVEDSFMHEIGSQEYARAKYGLTADNIA 298
            VEE S +GG G A+AE +A    +K  LL  G+ D F+   G      A  GL A  IA
Sbjct: 546 TVEEGSIMGGAGAAVAEAMAAAGIVK-PLLNLGLPDQFIDH-GDAGKLLALCGLDAAGIA 603

Query: 299 AKVEAAYRK 307
             +   + K
Sbjct: 604 TSIRKRFGK 612


>gi|152980222|ref|YP_001352521.1| transketolase [Janthinobacterium
           sp. Marseille]
          Length = 664

 Score = 56.6 bits (135), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 76/317 (23%), Positives = 125/317 (39%), Gaps = 32/317 (10%)

Query: 2   RNAFADEITKLGSSDPRVVLLSGDIGNKLFDKFK------AANTGRFLNCGIAEANMMGV 55
           R A  + I  L    P  +  S D+       +K      A   G  +N G+ E  M  +
Sbjct: 360 RKASQNAIQALAPVLPEFLGGSADLTGSNLTNWKECVAVRADQAGNHINYGVREFGMSAI 419

Query: 56  AAGMALSG-LRPVIYTITPFTTTRCFEQIRVDACYHNVPVIIVGTGSGLSYAELGPTHHS 114
             G+AL G   P   T   F+       +R+ A    +  I V T   +   E GPTH S
Sbjct: 420 MNGIALHGGYIPFGATFLTFSD-YSRNALRM-AALMKLRSIFVFTHDSIGLGEDGPTHQS 477

Query: 115 CEDLAIMRVLPNMTVLAPADEVELRQCLRAALKL-NGPVYIRIGKKG--------EQIVP 165
            E ++ +R++PN+    P D VE       A+K  +GP  +   ++         EQI  
Sbjct: 478 VEHVSSLRLIPNLDNWRPCDTVESAVAWEQAVKRKDGPSTLIFSRQNLPFQERTAEQIAN 537

Query: 166 KKDEHFEIGRAINVRAGDDVCLIGAGTLLPTVMAAAELLQARGISARVESFHTIKPLDEA 225
            K   + +  A N +A     LI  G+ +     AA+ L   G++ R+ S  +    D  
Sbjct: 538 IKRGGYVLRDAPNAKA----ILIATGSEIELATKAADELSKHGVAVRIVSMPSTDVFDRQ 593

Query: 226 NLQQAFAGYAVVAVVEEHSRIGGLGGAIAEWLAQQEPMKGRLLGFGVEDSFMHEIGSQEY 285
           +     A Y    + +   R+    G  + W  +   ++G ++G    D+F  E      
Sbjct: 594 D-----AAYKAGVLTKGVPRVAIEAGVTSFWY-KYVGLEGGVIGI---DTF-GESAPAGV 643

Query: 286 ARAKYGLTADNIAAKVE 302
               +G T +N+ A V+
Sbjct: 644 LFKHFGFTVENVIAAVK 660


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.137    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 696,334
Number of extensions: 29188
Number of successful extensions: 88
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 2
Length of query: 310
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 227
Effective length of database: 914,170
Effective search space: 207516590
Effective search space used: 207516590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)