BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4244.p
         (275 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980222|ref|YP_001352521.1| transketolase [Janthinobacteriu...   105   3e-24

>gi|152980222|ref|YP_001352521.1| transketolase [Janthinobacterium
           sp. Marseille]
          Length = 664

 Score =  105 bits (262), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/275 (28%), Positives = 129/275 (46%), Gaps = 17/275 (6%)

Query: 11  IASQLRGRIIDNAHRTQTPHLGSCLSCVDILTAAYFSTLRIDPSQPADPLRDRFILSKGH 70
           +A+ +R   +D   +  + H G  +   DI  A + +    +P+ P    RDRF+LS GH
Sbjct: 10  MANAIRALAMDAVQKANSGHPGMPMGMADIAVALWANHYSHNPANPKWVNRDRFVLSNGH 69

Query: 71  GAAALFQVLALRGFYPQSLLDDYGKDGGIFAEHP--PTPDHLPGIEAATGSLGHGLPIGL 128
           G+   + +L L G+     +D+      + ++ P  P  D  PGIE  TG LG G+   +
Sbjct: 70  GSMLHYALLHLTGY--DLSMDEIRNFRQLHSKTPGHPEVDITPGIETTTGPLGQGITNAV 127

Query: 129 GMALAGRIQQRRYD----------VTVLLGDGECNEGSVWEAAMMAAAQRVGNLMVLVDF 178
           GMALA ++    ++            V LGDG   EG   EA  +A   R+  L+ L D 
Sbjct: 128 GMALAEKLLAAEFNRPGFDVVNHHTYVFLGDGCLMEGISHEACSLAGTLRLSKLIALYDD 187

Query: 179 NKWQATGRSEEVLALNPLVDKWRAFGWDATE-IDGHDMSTLVELMGRPRAADSKPIAVVA 237
           N     G  E     +    ++ ++GW+    +DGHD++ +   + + +++D KP  +  
Sbjct: 188 NGISIDGHVEGWFT-DDTPKRFESYGWNVIRAVDGHDVNAVDAAIKQAKSSD-KPTLICC 245

Query: 238 HTIKGKGVSFMEDDNNWHYRIPNADEVAAAYQELG 272
            T+ GKG   ME  +N H       E+AA  + +G
Sbjct: 246 RTVIGKGSPNMEGTHNVHGAALGDKEIAATREAVG 280


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.136    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 713,147
Number of extensions: 31409
Number of successful extensions: 99
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 193
Effective length of database: 917,867
Effective search space: 177148331
Effective search space used: 177148331
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)