BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4243.p
         (330 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979841|ref|YP_001353943.1| dTDP-D-glucose 4,6-dehydratase ...   135   3e-33
gi|152983181|ref|YP_001353967.1| UDP-glucose 4-epimerase [Janthi...   113   2e-26

>gi|152979841|ref|YP_001353943.1| dTDP-D-glucose 4,6-dehydratase
           [Janthinobacterium sp. Marseille]
          Length = 332

 Score =  135 bits (340), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 94/327 (28%), Positives = 160/327 (48%), Gaps = 24/327 (7%)

Query: 6   LVIGSNSFSGASFV-DYLLRQGHDVIGASR-SQEPHQAFLPYRWSEHQAAFKFYPYDLNK 63
           LV G   F G++FV ++LLR    ++   + +   +   L    ++ +  F  +    + 
Sbjct: 3   LVTGGAGFIGSNFVREWLLRSSEAILNVDKLTYAGNLGNLDTVMTDVRHTF-IHADVCDH 61

Query: 64  DLAALTELIHREKPACVVNFAAQSMVAESWKNPEHWFETNVMATIRLHEVLRQC------ 117
           DL  +  L+ + KP+ +++ AA+S V  S + P  +  TN+  T  L E  R        
Sbjct: 62  DL--MLSLLLKHKPSAIIHCAAESHVDRSIQGPAEFIRTNINGTFSLLEAARAYWTGLGA 119

Query: 118 -DFLD-KYVHITTPEVYGST---DGFIKEDTPFNPSTPYAVSRAAADMSLKTYFEAYGFP 172
            D L  +++H++T E YGS    D    E T + P++PY+ S+AA+D  ++ YF  YG P
Sbjct: 120 EDKLQFRFLHVSTDEAYGSLEAGDAPFSETTAYAPNSPYSASKAASDHLVRAYFHTYGLP 179

Query: 173 VVFTRAANVYGPGQQLYRIIPRTILSVLTGKKLQLHGGGLSRRSFIHMRDVSSATHAIAS 232
            + T  +N YGP     ++IP  I + L GK L ++G G   R ++++ D   A   + +
Sbjct: 180 TLTTNCSNNYGPYHFPEKLIPLVIANALAGKALPIYGDGRQIRDWLYVGDHCIALRLVLA 239

Query: 233 RGVNGQTYHISTDEIVSVRELVERICAKL--------GVDFAANVEIVGERLGKDAAYML 284
           +GV G+TY+I      +  ++V  +C  L        G  +   V  V +R G D  Y +
Sbjct: 240 KGVPGETYNIGAQNQKTNLDVVYTLCDILDELKPLASGKSYRQQVVYVTDRPGHDRRYAI 299

Query: 285 DSSKLRQTLDWSVKISLDEGLDECVNW 311
           D+ K+ + L W    + D GL + V W
Sbjct: 300 DTGKIERELGWKPVEAFDTGLRKTVQW 326


>gi|152983181|ref|YP_001353967.1| UDP-glucose 4-epimerase
           [Janthinobacterium sp. Marseille]
          Length = 325

 Score =  113 bits (282), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 93/321 (28%), Positives = 151/321 (47%), Gaps = 14/321 (4%)

Query: 3   EKYLVIGSNSFSGASFVDYLLRQG-HDVIGASRSQEPHQAFLPYRWSEHQAAFKFYPYDL 61
           +  LV G   F G+  VD LL++G  +V+         +  L    +  +  F    Y  
Sbjct: 10  QSILVTGGAGFIGSHLVDGLLKEGAREVVVIDNLFVGSEDNLNSALATGKVVF----YRD 65

Query: 62  NKDLAALTELIHREKPACVVNFAAQSMVAESWKNPEHWFETNVMATIRLHEVLRQCDFLD 121
           + +L+   + I +     VV   A   +  S+ NP + F TNV   + L E+ R+  F  
Sbjct: 66  DAELSTSLDYIFKNHQIDVVFNCATKALNYSFLNPANAFSTNVTVVLNLLEIQRRGGF-K 124

Query: 122 KYVHITTPEVYGSTD-GFIKEDTPFNPSTPYAVSRAAADMSLKTYFEAYGFPVVFTRAAN 180
              H +T EVYGS     + E  P NP+T YA  +AAAD ++++Y   +       R  N
Sbjct: 125 TLCHFSTSEVYGSAVYEPMDEAHPKNPTTTYAAGKAAADHAVESYVRMFDLDAFIVRPFN 184

Query: 181 VYGPGQQ----LYRIIPRTILSVLTGKKLQLHGGGLSRRSFIHMRDVSSATHAIASRGVN 236
            YGP Q     L  IIP T   +L G   +LHG GL  R FI++ D   A   +  +   
Sbjct: 185 NYGPRQNYKGMLAGIIPITAWRILNGIAPELHGDGLQSRDFIYVHDTVDAVVKLYDKMPA 244

Query: 237 GQTYHISTDEIVSVRELVERICAKLGVDFAANVEIVGERLGKDAAYMLDSSKLRQTLDWS 296
           G++ +ISTD  +S+ EL+ RIC+ +G  +A  +     R      ++  + K+   +D+ 
Sbjct: 245 GESVNISTDNQISISELLPRICSGMG--YAGEIVKKPGRKSDVLCHLASNEKVHGMIDYK 302

Query: 297 VKISLDEGLDECVNWVQQNLD 317
           +    D+GL + + W + N++
Sbjct: 303 LT-PFDQGLRDTLAWYKANIE 322


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.134    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 778,283
Number of extensions: 31351
Number of successful extensions: 76
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 2
Length of query: 330
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 246
Effective length of database: 910,473
Effective search space: 223976358
Effective search space used: 223976358
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)