BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4242.p
         (195 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980295|ref|YP_001351895.1| phosphoheptose isomerase [Janth...    85   4e-18

>gi|152980295|ref|YP_001351895.1| phosphoheptose isomerase
           [Janthinobacterium sp. Marseille]
          Length = 198

 Score = 84.7 bits (208), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 76/135 (56%), Gaps = 2/135 (1%)

Query: 44  GRQVFLCGNGGSAGNAIHLANDFLYGIAKRTGGGMRVSALSANAAVLTCLANDIGYDHIY 103
           G ++  CGNGGSA +  H +   L G  +R    + V AL+ + ++LT + ND  Y  I+
Sbjct: 42  GNKILACGNGGSAADCQHFSAQ-LVGRFERERLPLPVMALTTDTSILTAIGNDYSYQEIF 100

Query: 104 SEQLAVQAQPGDLLIALSGSGNSANILRALEQARKMDVISCAILGYSGG-KAKALCDIPI 162
           S+Q+    Q GD+L+ALS SGNSAN+  A+E A + D+   A+ G  GG  AK L D  +
Sbjct: 101 SKQVQAFGQSGDVLLALSTSGNSANVNAAIEAALERDMRVVALTGKGGGATAKLLTDADV 160

Query: 163 HFAVDDMQIAEDMQV 177
           H  V   + A   +V
Sbjct: 161 HICVPHDRTARIQEV 175


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.133    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 465,724
Number of extensions: 18778
Number of successful extensions: 59
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 1
Length of query: 195
Length of database: 1,221,021
Length adjustment: 78
Effective length of query: 117
Effective length of database: 932,655
Effective search space: 109120635
Effective search space used: 109120635
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)