BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4241.p
         (316 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980613|ref|YP_001353946.1| nucleoside-diphosphate-sugar ep...    59   5e-10
gi|152980429|ref|YP_001352334.1| UDP-glucose 4-epimerase [Janthi...    55   8e-09

>gi|152980613|ref|YP_001353946.1| nucleoside-diphosphate-sugar
           epimerases [Janthinobacterium sp. Marseille]
          Length = 312

 Score = 58.5 bits (140), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 104/232 (44%), Gaps = 24/232 (10%)

Query: 2   NILVTGGCGYKGSVLVPKLLARGYKVHVLDIMWFGNYLAPHPNLTVTAGDVR-NID-QIN 59
            ILVTG  G+ G  L   L ARG       I +         +  V  GD+  N D  + 
Sbjct: 3   QILVTGANGFVGRSLCAALRARG-------IPFVPAVRKKSCDDEVAIGDLNANTDWGMA 55

Query: 60  LDGVDTIIHLSS---VANDPCGDLDPKLTWE-VSALATMQLADKAVRKGVKQFIYASSGS 115
           L G D +IHL++   V ND   D  P   +  V+  AT+ LA +A+  GVK+F++ SS  
Sbjct: 56  LHGCDAVIHLAARVHVMNDTSSD--PLAAFRAVNVDATLNLARQAIAAGVKRFVFVSSIK 113

Query: 116 VYGVKE-ELQVTEDLELKPISEYNKTKMVSEPVL--LSYKDRMIVQIVRPATVCGYSPRM 172
           V G +  E   T   E  P   Y  +K+ +E  L  L+ +  + V IVRP  +  Y P +
Sbjct: 114 VNGEETGEHPYTAFDEPAPTDPYGISKLEAEIALKELAQETGLEVVIVRPPLI--YGPGV 171

Query: 173 RLDVSVNLLTMQALAKGKITVFGGTQVRPN-IHIDDITDVYLHLIDHPEITG 223
           R +       MQ +  G     G    R + + +D++ D+ +    HP   G
Sbjct: 172 RANFQ---RLMQLVKMGLPLPLGAINNRRSMVAVDNLHDLLILCTHHPAAVG 220


>gi|152980429|ref|YP_001352334.1| UDP-glucose 4-epimerase
           [Janthinobacterium sp. Marseille]
          Length = 339

 Score = 54.7 bits (130), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 129/322 (40%), Gaps = 46/322 (14%)

Query: 1   MNILVTGGCGYKGSVLVPKLLARGYKVHVLDIMWFGNYLAPHPNLTVTAGDVRNI----- 55
           M ILVTGG GY GS    +L+  GY+V V+D +            T+T   +  I     
Sbjct: 1   MQILVTGGAGYIGSHTCVELIKAGYQVVVVDNLCNSKLTVLDRVATITGCSIPFIEADLR 60

Query: 56  DQINLDGV------DTIIHLSSVANDPCGDLDPKLTWEVSALATMQLADKAVRKGVKQFI 109
           D+  ++ +      D ++H + +        +P   ++ +   ++ L     + GVK  +
Sbjct: 61  DRSAMEEIFSAYDFDAVVHFAGLKAVGESVAEPLRYYDNNVEGSLVLFQVMAKYGVKSLV 120

Query: 110 YASSGSVYGVKEELQVTEDLELKPISEYNKTKMVSEPVLLSYKDR------MIVQIVRPA 163
           ++SS +VYG    + + ED  L   + Y ++K++ E +L             +++   PA
Sbjct: 121 FSSSATVYGDPATVPIVEDFPLAATNPYGRSKLMIEEMLRDVATSDPSWRIALLRYFNPA 180

Query: 164 -----TVCGYSPRMRLDVSVNLLTMQA-LAKGK---ITVFG-------GTQVRPNIHIDD 207
                 + G  P    D+  NL    A +A G+   ++V+G       GT VR  IH+ D
Sbjct: 181 GAHESGLIGEDPN---DIPNNLFPYVAQVASGRRELLSVYGSDYPTTDGTGVRDYIHVVD 237

Query: 208 IT----DVYLHLIDHPEITGVYNAGFENIS-----ILDIAKMVAKHIPVDIVVTESND-P 257
           +          L++       YN G    S     I    K   + IP  IV     D  
Sbjct: 238 LALGHVKTLARLMNTEAGVLAYNLGTGCGSSVLQMICAFEKASGRKIPYRIVARRPGDIA 297

Query: 258 RSYRVNSDKLLATGFKPSKSVE 279
             Y   S      G++  +S+E
Sbjct: 298 VCYADASLAQRELGWRAERSIE 319


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.136    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 725,455
Number of extensions: 28908
Number of successful extensions: 91
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 2
Length of query: 316
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 233
Effective length of database: 914,170
Effective search space: 213001610
Effective search space used: 213001610
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)