BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4237.p
         (185 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980058|ref|YP_001353941.1| dTDP-4-dehydrorhamnose 3,5-epim...   119   1e-28

>gi|152980058|ref|YP_001353941.1| dTDP-4-dehydrorhamnose
           3,5-epimerase [Janthinobacterium sp. Marseille]
          Length = 183

 Score =  119 bits (297), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/179 (40%), Positives = 97/179 (54%), Gaps = 4/179 (2%)

Query: 1   MNLQIMPTGIDGAVLISSRRRGDARGSFARWFCEEELAPVLG-TSHIVQINHSFTEEVGS 59
           M ++++ T I   +L+     GD RG F   F E   A V G T   VQ NHS +   G 
Sbjct: 1   MKMKLVQTKIPDILLLEPNVLGDDRGFFFESFNERRFAEVTGKTVKFVQDNHSRSLR-GV 59

Query: 60  VRGMHFQYAPMAEKKLIRCLAGRVFDVVLDLRAGSPTFLQWRGIELAAGDDRALLIPEGC 119
           +RG+H+Q     + KL+R ++G VFDV +D+R  SPTF QW G  L+A + R + IPEG 
Sbjct: 60  LRGLHYQIQ-QPQGKLVRVVSGEVFDVAVDIRKSSPTFGQWAGAVLSAENQRQMWIPEGF 118

Query: 120 AHGFQVLQGGAALLYLHTAPYAPHAEGGVRHDDPRVAIAWPLPPCN-LSPRDLQHPLLA 177
           AHGF V    A  LY  T  +AP  E  +  DDP + I WP+     LS +D Q   LA
Sbjct: 119 AHGFVVTSDTAEFLYKTTDYWAPEHERCIAWDDPAIGIDWPINGVPILSAKDQQGTRLA 177


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.324    0.142    0.453 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 481,461
Number of extensions: 20083
Number of successful extensions: 34
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 1
Length of query: 185
Length of database: 1,221,021
Length adjustment: 78
Effective length of query: 107
Effective length of database: 932,655
Effective search space: 99794085
Effective search space used: 99794085
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 127 (53.5 bits)