BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4236.p
         (407 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982956|ref|YP_001353963.1| C-methyltransferase [Janthinoba...    65   6e-12

>gi|152982956|ref|YP_001353963.1| C-methyltransferase
           [Janthinobacterium sp. Marseille]
          Length = 389

 Score = 65.5 bits (158), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 84/358 (23%), Positives = 136/358 (37%), Gaps = 31/358 (8%)

Query: 40  PLKVMVCRQCWLVQTEDYTHYDQLFANDYAYFSSTSSTWLQHAA--RYVDMIAARL---- 93
           P K++V  Q  L+  +     +Q  +  Y   S   S   +H     Y D   A +    
Sbjct: 35  PFKLLVDEQTGLLIQKPDAEVEQALSVAYELGSVLGSNVDEHGQGRHYADDFLAFIEQEL 94

Query: 94  --ALGSQSLVVELAANDGYLLQYVQQKGIPCLGVEPTTSTADAARAKGIPIVEEFF--GV 149
             A   Q  V+E+   +GYL+  +  K    LG+EP       A   G+ I+  FF  G+
Sbjct: 95  DSAGLEQGAVLEIGCGNGYLMSRLVGKVGSVLGIEPGPQGQHGAEKFGVNIIRGFFPEGI 154

Query: 150 ALGQRLRASHGAADLIAANNVLAHVPDINDFVGGMTALLAPQGTVTVECPHLLNLIEQSQ 209
           A  Q+  A       I  N+VL H+ D    +  ++  L P G + +  P     I    
Sbjct: 155 A-DQKFSA-------IILNSVLEHIQDPVSMIRLISQYLEPNGLILISVPDESAYILNDD 206

Query: 210 FDTIYHEHFSYLSLVAVQRVMQAQGLRVYDVEALPTHGGSLRIYACHADAAIATTPAVAA 269
             T++HEH+S+     ++  +    + V   E     G SL      AD      PA   
Sbjct: 207 VSTLFHEHWSFFDQTTLKNTIATAQMHVLRCEP-SGFGASLYASIAMADGKSVVAPAGVD 265

Query: 270 MLARERDFGLERIEGYAGFQARAEEIKLQLLSFLLEQKRAGKKVLAYGAAAKGNTLLNYS 329
                     E IE    +   A +    +L    ++  A  K L     A+    +  +
Sbjct: 266 ----------EAIELACRYMKDASK-NCDVLREACQKMTADGKTLGVYVPARFINAMAIA 314

Query: 330 GVHPDLLPMVADAALSKQGKYMPGSHIPIVSPQRLLEEKPDVVLILPWNIKDEVAQQL 387
           G+ PD+     D   +  G + P   I + S   L+E   D VLI+      ++A++L
Sbjct: 315 GI-PDVGIRFFDDDPALIGTFYPSIPIVVESGTTLIENPTDSVLIMSRTFGPKLAERL 371


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.135    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 894,038
Number of extensions: 34943
Number of successful extensions: 123
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 322
Effective length of database: 906,776
Effective search space: 291981872
Effective search space used: 291981872
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)