BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4234.p
         (316 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979832|ref|YP_001353940.1| dTDP-4-dehydrorhamnose reductas...   259   2e-70
gi|152980065|ref|YP_001353949.1| dTDP-4-dehydrorhamnose reductas...    63   2e-11

>gi|152979832|ref|YP_001353940.1| dTDP-4-dehydrorhamnose reductase
           [Janthinobacterium sp. Marseille]
          Length = 298

 Score =  259 bits (661), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 141/304 (46%), Positives = 185/304 (60%), Gaps = 21/304 (6%)

Query: 5   RILLTGASGQIGGELLRRLRAMPAGVEVIAPTRAQLDLADLDALRAAVRHAQPDLILHPA 64
           +ILLTG +GQ+G EL R L+ +    +V+A  RAQ+DL+DLD +R+ +R  +P LI++PA
Sbjct: 2   KILLTGRNGQVGYELERTLQGLG---QVVALDRAQMDLSDLDQVRSVIREVKPQLIVNPA 58

Query: 65  AYTAVVKAESEPELARRLNAEAPAVLAEEAARLGAALVHFSTDYVFDGRHDGRYTEDMPT 124
           AYTAV  AE E ELA R+NA+AP V+A+EA +LGA ++H+STDYVFDG   G YTED   
Sbjct: 59  AYTAVDLAEREVELAMRINAQAPEVIAQEAKKLGAGMIHYSTDYVFDGDQTGSYTEDDVP 118

Query: 125 NPLNVYGATKREGELTIAASGAAYWILRTSWVYNLAGNNFMKTAIRLAQQKESYTIVGDQ 184
           NP +VYG +K  GE  + A+G  + ILRTSWVY   G NF+ T  RLAQ+++   IV DQ
Sbjct: 119 NPQSVYGRSKLAGEQAVQAAGIPHLILRTSWVYGARGKNFLLTVRRLAQERDELRIVADQ 178

Query: 185 FGAPTWASTIAAVCCRML----------AGAGGGREKVAATSGIYHLTAAGATSWHGYAS 234
           FGAPTW  TIA      L            AG  ++      G+YHL+A G TSWHG   
Sbjct: 179 FGAPTWCRTIAEATAHALIQMQRYSGTQKDAGLDQDVWLNRGGLYHLSAQGRTSWHGLTQ 238

Query: 235 LIASELMARGVTLKLKGLEQITPVPTSSYPTPPERPLNSRLDCSKLERSFGLTLPAWDED 294
            I   L    ++ K +    +TP+ T  YP P  RP NS L C +  ++F   LP WDE 
Sbjct: 239 AI---LAHPSISKKPR----LTPISTQDYPLPARRPANSSLSCERFMQTF-CGLPEWDEA 290

Query: 295 ALAC 298
              C
Sbjct: 291 LKLC 294


>gi|152980065|ref|YP_001353949.1| dTDP-4-dehydrorhamnose reductase
           [Janthinobacterium sp. Marseille]
          Length = 284

 Score = 63.2 bits (152), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 69/152 (45%), Gaps = 19/152 (12%)

Query: 5   RILLTGASGQIGGELLRRLRAMPAGVEVIAPTRAQ-----------------LDLADLDA 47
           RIL+ GASG +G  ++R L     G EV    R+                   D+ + DA
Sbjct: 2   RILVLGASGMLGSAMMRVLNEKDVG-EVFGTVRSANVARFFTPQIAQRLVPGCDVENQDA 60

Query: 48  LRAAVRHAQPDLILHPAAYTAVVKAESEPELARRLNAEAPAVLAEEAARLGAALVHFSTD 107
           L       +PD++++       +    +P +A  +N+  P  LA      GA L+H STD
Sbjct: 61  LNKVFAEIKPDVVINCIGLIKQLAEADDPLVALPINSLLPHRLAALCKLGGARLIHISTD 120

Query: 108 YVFDGRHDGRYTEDMPTNPLNVYGATKREGEL 139
            VFDG   G Y E   +N  ++YG +K  GE+
Sbjct: 121 CVFDGARGG-YLESDVSNATDLYGKSKYLGEV 151


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.132    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 650,711
Number of extensions: 23057
Number of successful extensions: 116
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 2
Length of query: 316
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 233
Effective length of database: 914,170
Effective search space: 213001610
Effective search space used: 213001610
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)