BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4233.p
         (173 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980058|ref|YP_001353941.1| dTDP-4-dehydrorhamnose 3,5-epim...   259   8e-71

>gi|152980058|ref|YP_001353941.1| dTDP-4-dehydrorhamnose
           3,5-epimerase [Janthinobacterium sp. Marseille]
          Length = 183

 Score =  259 bits (661), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 118/170 (69%), Positives = 137/170 (80%)

Query: 1   VLLIEPRVFGDNRGFFYESFNQRSFQEQTAVDVQFVQDNHSRSARGVLRGLHYQIRHPQG 60
           +LL+EP V GD+RGFF+ESFN+R F E T   V+FVQDNHSRS RGVLRGLHYQI+ PQG
Sbjct: 13  ILLLEPNVLGDDRGFFFESFNERRFAEVTGKTVKFVQDNHSRSLRGVLRGLHYQIQQPQG 72

Query: 61  KLVRVVRGAVLDVALDIRRASPTFGQWFSVLLSAENKRQLWIPPGFAHGFSVLEDDTEFL 120
           KLVRVV G V DVA+DIR++SPTFGQW   +LSAEN+RQ+WIP GFAHGF V  D  EFL
Sbjct: 73  KLVRVVSGEVFDVAVDIRKSSPTFGQWAGAVLSAENQRQMWIPEGFAHGFVVTSDTAEFL 132

Query: 121 YKTTDYWMPEHERCILWNDPALAIDWQLQGEPIMSEKDKHGTPFLNAEVF 170
           YKTTDYW PEHERCI W+DPA+ IDW + G PI+S KD+ GT   +AEVF
Sbjct: 133 YKTTDYWAPEHERCIAWDDPAIGIDWPINGVPILSAKDQQGTRLADAEVF 182


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.323    0.139    0.443 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 423,962
Number of extensions: 16091
Number of successful extensions: 38
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 1
Length of query: 173
Length of database: 1,221,021
Length adjustment: 77
Effective length of query: 96
Effective length of database: 936,352
Effective search space: 89889792
Effective search space used: 89889792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 126 (53.1 bits)