BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4232.p (300 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980566|ref|YP_001353942.1| dTDP-glucose pyrophosphorylase ... 477 e-136 gi|152980167|ref|YP_001353754.1| UTP--glucose-1-phosphate uridyl... 81 7e-17 gi|152979925|ref|YP_001352335.1| mannose-1-phosphate guanylyltra... 76 3e-15 gi|152982188|ref|YP_001352105.1| nucleotidyl transferase [Janthi... 60 2e-10 >gi|152980566|ref|YP_001353942.1| dTDP-glucose pyrophosphorylase [Janthinobacterium sp. Marseille] Length = 300 Score = 477 bits (1227), Expect = e-136, Method: Compositional matrix adjust. Identities = 221/297 (74%), Positives = 259/297 (87%) Query: 1 MTDVAQASRRKGIILAGGSGTRLYPATTVVSKQLMPIYDKPMVYYPLSSLMLAGIRDILL 60 M+ + RKGIILAGGSG RLYPAT +SKQL+P+YDKPM+YYPL++LMLAGIRDILL Sbjct: 1 MSLTMDQASRKGIILAGGSGARLYPATVAISKQLLPVYDKPMIYYPLTTLMLAGIRDILL 60 Query: 61 ISTPQDTPRFAELLGDGQQWGLNISYAVQPSPDGLAQAFLIGRDFIGADPSALILGDNIF 120 ISTPQDTPRF +LL DG QWG+N+SYAVQP+P+GLAQAF+IGR FIG DPSALILGDN++ Sbjct: 61 ISTPQDTPRFQQLLKDGSQWGINLSYAVQPAPEGLAQAFIIGRHFIGNDPSALILGDNLY 120 Query: 121 YGRDLEPPMRVANARLDGATIFAYHVQDPERYGVVEFDSQRRVIGIEEKPLQPKSNFAVT 180 YG + + A+AR+ G+T+FAYHVQDPERYGVVEFD + + + IEEKPL PKSN+AVT Sbjct: 121 YGHAFDQQLMQASARIHGSTVFAYHVQDPERYGVVEFDDKHQAVSIEEKPLVPKSNYAVT 180 Query: 181 GLYFYDNQVIDIAREIKPSARGELEITDVNRAYLERGQLQVELMGRGIAWLDTGTHESLL 240 GLYFYDNQV DIA I+PS RGELEITDVNRAYL RG+L VELMGRG+AWLDTGTHESLL Sbjct: 181 GLYFYDNQVCDIAASIQPSGRGELEITDVNRAYLARGELNVELMGRGMAWLDTGTHESLL 240 Query: 241 DAGQFIATIEKRQGLKIACPEEIAYRRGYIDAAQLEKLAAPLKKNAYGKYLIQLLTD 297 +AGQFIATIE RQGLKIACPEEIA+R+GYIDAAQ+E+LA P K+ AYGKYL+++L D Sbjct: 241 EAGQFIATIEHRQGLKIACPEEIAFRKGYIDAAQMERLAEPFKQTAYGKYLLRILDD 297 >gi|152980167|ref|YP_001353754.1| UTP--glucose-1-phosphate uridylyltransferase [Janthinobacterium sp. Marseille] Length = 291 Score = 81.3 bits (199), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 69/238 (28%), Positives = 106/238 (44%), Gaps = 45/238 (18%) Query: 10 RKGIILAGGSGTRLYPATTVVSKQLMPIYDKPMVYYPLSSLMLAGIRDILLIS------- 62 RK + G G+R PAT K+++P+ DKP++ Y + + AGI D++ I+ Sbjct: 5 RKAVFPVAGLGSRFLPATKAQPKEMLPVVDKPLIQYAVEEAVAAGITDMVFITGRNKRAI 64 Query: 63 --------------TPQDTPRFAELLGDGQQWGLNISYAVQPSPDGLAQAFLIGRDFIGA 108 + EL+ + +N Y Q +P GL A L R IG Sbjct: 65 EDHFDTAYELEAELEAANKNALLELVRNVIPKNINCIYIRQSAPLGLGHAVLCARPVIGN 124 Query: 109 DPSALILGDNIFYGRDLEPPMRVANARL------DGATIFAYHVQDPER-----YGVVE- 156 DP A++L D+ D + ++ A++ +G +I A VQD R YG+V Sbjct: 125 DPFAVLLADDFM---DTDEGVKPVLAQMTDVFQREGHSILA--VQDVPRAETKQYGIVSA 179 Query: 157 --FDSQRRVI-GIEEKPLQPK---SNFAVTGLYFYDNQVIDIAREIKPSARGELEITD 208 + Q ++ I EKP QP S AV G Y N++ D I A GE+++TD Sbjct: 180 TAYQPQLELVNAIVEKP-QPDVAPSTLAVVGRYVLSNKIFDYLETIGKGAGGEIQLTD 236 >gi|152979925|ref|YP_001352335.1| mannose-1-phosphate guanylyltransferase [Janthinobacterium sp. Marseille] Length = 385 Score = 75.9 bits (185), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 60/201 (29%), Positives = 101/201 (50%), Gaps = 24/201 (11%) Query: 11 KGIILAGGSGTRLYPATTVVSKQLMPIYDKPMVYYPLSSLMLAGIRDILLISTPQDTPRF 70 K +ILA G GTR+ P T + K ++PI KP++ Y + L+ GI +I +++ + Sbjct: 2 KAMILAAGKGTRVQPLTYELPKPMIPILGKPVMEYLVEHLVKYGIHEI-MVNVSYLHQKI 60 Query: 71 AELLGDGQQWGLNISYA----------VQPSPDGLAQAFLIGRDFIG--ADPSALILGDN 118 + G+GQ++G I Y+ V P P G A ++F G + + +I GD Sbjct: 61 EDYFGEGQRFGAQIGYSFEGYMTDEGEVMPKPIGSAGGLKKIQEFGGFFDETTLVICGDA 120 Query: 119 IFYGRDLEPPMRVANARLDGATIFAYHVQDP----ERYGVVEFDSQRRVIGIEEKPLQPK 174 + DL+ + R GA + + P YG+V D + RV+ +EKP +P+ Sbjct: 121 LI---DLDIKSALFEHRRKGAMVSIITKEVPLEKASDYGMVVTDEEGRVLSFQEKP-KPE 176 Query: 175 ---SNFAVTGLYFYDNQVIDI 192 SN A TG+Y ++ +V+D+ Sbjct: 177 DALSNLASTGIYIFEPEVLDL 197 >gi|152982188|ref|YP_001352105.1| nucleotidyl transferase [Janthinobacterium sp. Marseille] Length = 238 Score = 59.7 bits (143), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 67/248 (27%), Positives = 104/248 (41%), Gaps = 42/248 (16%) Query: 11 KGIILAGGSGTRLYPATTVVSKQLMPIYDKPMVYYPLSSLMLAGIRDILLISTPQDTPRF 70 K +I A G G R+ P T K L+ + +P++ + + +L+ AGI DI +I+ Sbjct: 2 KAMIFAAGRGERMRPLTDTCPKPLLTVRGRPLIVWHILNLVRAGITDI-VINHAHLGNLI 60 Query: 71 AELLGDGQQWGLNISYAVQPSPDGLAQAFLIGRDFIGADPSALILGDNIFYGRDLEPPMR 130 E LGDG Q+G ISY+ + + A R +G +P + D + E + Sbjct: 61 EETLGDGTQFGARISYSAEGTALETAGGVAKARHLLGDEPFLALAADIYCPHFNFE---Q 117 Query: 131 VANARLDGATIFA-------------YHVQDPERYGVVEFDSQRRVIGIEEKPLQPKSNF 177 V N L+ A ++ Y V++P + +F + E +PK F Sbjct: 118 VKNV-LEDADVWGNPYPVDQRDVAWLYLVKNPAHHPQGDFALHSFSVANEG---EPKLTF 173 Query: 178 AVTGLYFYDNQVIDIAREIKPS-----ARGE-LEITDVNRAYLERGQLQVELMGRGIAWL 231 + G+Y +PS A GE ++ + R Y RGQL EL W Sbjct: 174 SGIGVY-------------RPSMFDAIAAGESAKLVTLLREYAARGQLGGELYHGD--WT 218 Query: 232 DTGTHESL 239 D GT E L Sbjct: 219 DVGTVERL 226 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.139 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 729,556 Number of extensions: 32112 Number of successful extensions: 91 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 87 Number of HSP's successfully gapped: 4 Length of query: 300 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 217 Effective length of database: 914,170 Effective search space: 198374890 Effective search space used: 198374890 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)