BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4230.p (336 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980429|ref|YP_001352334.1| UDP-glucose 4-epimerase [Janthi... 444 e-126 gi|152983181|ref|YP_001353967.1| UDP-glucose 4-epimerase [Janthi... 80 2e-16 gi|152979841|ref|YP_001353943.1| dTDP-D-glucose 4,6-dehydratase ... 79 3e-16 >gi|152980429|ref|YP_001352334.1| UDP-glucose 4-epimerase [Janthinobacterium sp. Marseille] Length = 339 Score = 444 bits (1142), Expect = e-126, Method: Compositional matrix adjust. Identities = 209/336 (62%), Positives = 256/336 (76%), Gaps = 2/336 (0%) Query: 1 MNILVTGGAGYIGSHTCVELLNAGHEVIVFDNFCNSSPESVKRVQQITGRSLSLVKGDIR 60 M ILVTGGAGYIGSHTCVEL+ AG++V+V DN CNS + RV ITG S+ ++ D+R Sbjct: 1 MQILVTGGAGYIGSHTCVELIKAGYQVVVVDNLCNSKLTVLDRVATITGCSIPFIEADLR 60 Query: 61 NRDQLESVLREFKCEAVIHFAGLKAVGESVEQPLKYYDNNVVGTVRLLEAMEAAGVKTFV 120 +R +E + + +AV+HFAGLKAVGESV +PL+YYDNNV G++ L + M GVK+ V Sbjct: 61 DRSAMEEIFSAYDFDAVVHFAGLKAVGESVAEPLRYYDNNVEGSLVLFQVMAKYGVKSLV 120 Query: 121 FSSSATVYGDPQYLPLTESHPLSASNPYGRSKIIIEDMLRDYYRAHPDWKIALLRYFNPV 180 FSSSATVYGDP +P+ E PL+A+NPYGRSK++IE+MLRD + P W+IALLRYFNP Sbjct: 121 FSSSATVYGDPATVPIVEDFPLAATNPYGRSKLMIEEMLRDVATSDPSWRIALLRYFNPA 180 Query: 181 GAHESGLIGEDPSGIPNNLMPYVAQVAVGRRERLSIWGGDYATPDGTGVRDFIHVVDLAI 240 GAHESGLIGEDP+ IPNNL PYVAQVA GRRE LS++G DY T DGTGVRD+IHVVDLA+ Sbjct: 181 GAHESGLIGEDPNDIPNNLFPYVAQVASGRRELLSVYGSDYPTTDGTGVRDYIHVVDLAL 240 Query: 241 GHVAALQALTAPEC--FAVNLGTGIGYSVLDVVKAYEKAAGKAIPYTIAARRPGDIASCY 298 GHV L L E A NLGTG G SVL ++ A+EKA+G+ IPY I ARRPGDIA CY Sbjct: 241 GHVKTLARLMNTEAGVLAYNLGTGCGSSVLQMICAFEKASGRKIPYRIVARRPGDIAVCY 300 Query: 299 ADPAEARRKLGWEAKRGLDAMCADSWRWQQNNPNGF 334 AD + A+R+LGW A+R ++ MCADSWRWQ + F Sbjct: 301 ADASLAQRELGWRAERSIEQMCADSWRWQAMSEEKF 336 >gi|152983181|ref|YP_001353967.1| UDP-glucose 4-epimerase [Janthinobacterium sp. Marseille] Length = 325 Score = 79.7 bits (195), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 86/331 (25%), Positives = 136/331 (41%), Gaps = 23/331 (6%) Query: 2 NILVTGGAGYIGSHTCVELLNAG-HEVIVFDNFCNSSPESVKRVQQITGRSLSLVKGDIR 60 +ILVTGGAG+IGSH LL G EV+V DN S +++ TG+ + + D Sbjct: 11 SILVTGGAGFIGSHLVDGLLKEGAREVVVIDNLFVGSEDNLNSALA-TGKVV-FYRDDAE 68 Query: 61 NRDQLESVLREFKCEAVIHFAGLKAVGESVEQPLKYYDNNVVGTVRLLEAMEAAGVKTFV 120 L+ + + + + V + A KA+ S P + NV + LLE G KT Sbjct: 69 LSTSLDYIFKNHQIDVVFNCA-TKALNYSFLNPANAFSTNVTVVLNLLEIQRRGGFKTLC 127 Query: 121 FSSSATVYGDPQYLPLTESHPLSASNPYGRSKIIIEDMLRDYYRAHPDWKIALLRYFNPV 180 S++ VYG Y P+ E+HP + + Y K + + Y R D ++R FN Sbjct: 128 HFSTSEVYGSAVYEPMDEAHPKNPTTTYAAGKAAADHAVESYVRMF-DLDAFIVRPFNNY 186 Query: 181 GAHESGLIGEDPSGIPNNLMPYVA-QVAVGRRERLSIWGGDYATPDGTGVRDFIHVVDLA 239 G ++ G+ ++P A ++ G L DG RDFI+V D Sbjct: 187 GPR------QNYKGMLAGIIPITAWRILNGIAPELH--------GDGLQSRDFIYVHDTV 232 Query: 240 IGHVAALQALTAPECFAVNLGTGIGYSVLDVVKAYEKAAGKAIPYTIAARRPGDIASCYA 299 V + A E +VN+ T S+ +++ G A R D+ A Sbjct: 233 DAVVKLYDKMPAGE--SVNISTDNQISISELLPRICSGMGYAGEIVKKPGRKSDVLCHLA 290 Query: 300 DPAEARRKLGWEAKRGLDAMCADSWRWQQNN 330 + + ++ D D+ W + N Sbjct: 291 SNEKVHGMIDYKLTP-FDQGLRDTLAWYKAN 320 >gi|152979841|ref|YP_001353943.1| dTDP-D-glucose 4,6-dehydratase [Janthinobacterium sp. Marseille] Length = 332 Score = 79.3 bits (194), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 87/343 (25%), Positives = 145/343 (42%), Gaps = 37/343 (10%) Query: 3 ILVTGGAGYIGSHTCVELLNAGHEVIVFDNFCNSSPESVKRVQQITGRSLSLVKGDIRNR 62 ILVTGGAG+IGS+ E L E I+ + + +T + + D+ + Sbjct: 2 ILVTGGAGFIGSNFVREWLLRSSEAILNVDKLTYAGNLGNLDTVMTDVRHTFIHADVCDH 61 Query: 63 DQLESVLREFKCEAVIHFAGLKAVGESVEQPLKYYDNNVVGTVRLLEAMEA--AGVKT-- 118 D + S+L + K A+IH A V S++ P ++ N+ GT LLEA A G+ Sbjct: 62 DLMLSLLLKHKPSAIIHCAAESHVDRSIQGPAEFIRTNINGTFSLLEAARAYWTGLGAED 121 Query: 119 -----FVFSSSATVYGDPQY--LPLTESHPLSASNPYGRSKIIIEDMLRDYYRAHPDWKI 171 F+ S+ YG + P +E+ + ++PY SK + ++R Y+ + Sbjct: 122 KLQFRFLHVSTDEAYGSLEAGDAPFSETTAYAPNSPYSASKAASDHLVRAYFHTYG---- 177 Query: 172 ALLRYFNPVGAHESGLIGEDPSGIPNNLMPYVAQVAVGRRERLSIWGGDYATPDGTGVRD 231 L ++ G P P L+P V A+ + L I+G DG +RD Sbjct: 178 --LPTLTTNCSNNYG-----PYHFPEKLIPLVIANALAGKA-LPIYG------DGRQIRD 223 Query: 232 FIHVVDLAIGHVAALQALTAPECF---AVNLGTGIG--YSVLDVVKAYEK-AAGKAIPYT 285 +++V D I L E + A N T + Y++ D++ + A+GK+ Sbjct: 224 WLYVGDHCIALRLVLAKGVPGETYNIGAQNQKTNLDVVYTLCDILDELKPLASGKSYRQQ 283 Query: 286 I--AARRPGDIASCYADPAEARRKLGWEAKRGLDAMCADSWRW 326 + RPG D + R+LGW+ D + +W Sbjct: 284 VVYVTDRPGHDRRYAIDTGKIERELGWKPVEAFDTGLRKTVQW 326 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.136 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 857,197 Number of extensions: 37149 Number of successful extensions: 118 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 113 Number of HSP's successfully gapped: 4 Length of query: 336 Length of database: 1,221,021 Length adjustment: 84 Effective length of query: 252 Effective length of database: 910,473 Effective search space: 229439196 Effective search space used: 229439196 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)