BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4229.p
         (371 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980659|ref|YP_001353948.1| capsular polysaccharide synthes...    60   3e-10

>gi|152980659|ref|YP_001353948.1| capsular polysaccharide synthesis
           enzyme [Janthinobacterium sp. Marseille]
          Length = 336

 Score = 59.7 bits (143), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 77/309 (24%), Positives = 129/309 (41%), Gaps = 38/309 (12%)

Query: 17  FWRGKRVFITGHTG-FKGGWLSLWLHMMGARVSGYSLPAPTNPSLFHLARLHNCLHTTTG 75
            +  K + ITG TG F    L  +L      +  +S        +  +A  +N +    G
Sbjct: 1   MFDDKVLMITGGTGSFGNTVLKRFLDTDVREIRIFSRDEKKQEDM-RIALGNNKVKFYIG 59

Query: 76  DVRDPLHLAHSMAAAQADVVFHLAAQALVRDSYLTPVDTYATNVMGTVHVLEAVRQTPSV 135
           DVRD   L  +M     D VFH AA   V      P++   TNV+GT +VL A   +  V
Sbjct: 60  DVRDYDSLTQAMTGV--DFVFHAAALKQVPSCEFYPMEAVRTNVLGTENVLNAA-ISSKV 116

Query: 136 RSVVVVTSDKCYENREWLWGYREDEPMGGHDPYSSSKGVAELVTAAYRRSFFGKAGNEQV 195
           + VVV+++DK               P+   +    SK +AE +  A  R+   + G    
Sbjct: 117 KRVVVLSTDKAV------------YPI---NAMGISKAMAEKLVIAKSRT-IAEGGP--- 157

Query: 196 GIASVRAGNVIGGGDFAADRLIPDFIRALEKDAPVSIRNPTAVRPWQFVLEPLSGYLQIA 255
            + S R GNV+     +   +IP FI  L+   P+++ +P   R   F++      L+ +
Sbjct: 158 VVCSTRYGNVMA----SRGSVIPLFINQLKSGQPITVTDPNMTR---FLMS-----LEDS 205

Query: 256 QLLYEHGSQYAEGWNFGPAETDPKTVGQLCTTFNQALQQHQVAPARVVLEPQANAPHEAH 315
             L  H  ++AE  +    +    TV  L     +  Q +     +V+        +E+ 
Sbjct: 206 VDLVLHAFEHAEQGDLFVQKAPASTVADLAQALRELFQLNN--EVKVIGTRHGEKLYESL 263

Query: 316 LLRLDISKA 324
           + R +++KA
Sbjct: 264 ISREEMAKA 272


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.134    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 903,245
Number of extensions: 36708
Number of successful extensions: 97
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 286
Effective length of database: 906,776
Effective search space: 259337936
Effective search space used: 259337936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)