BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4227.p
         (273 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980638|ref|YP_001355323.1| F0F1 ATP synthase subunit A [Ja...   440   e-125

>gi|152980638|ref|YP_001355323.1| F0F1 ATP synthase subunit A
           [Janthinobacterium sp. Marseille]
          Length = 273

 Score =  440 bits (1131), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 224/272 (82%), Positives = 251/272 (92%), Gaps = 3/272 (1%)

Query: 5   AAEHAL-TASEYIVHHLGHFSTHHQTKIVDFSILNVDTIFWSVFCGVVGCLFMFLAARKA 63
           A +HA  TASEYIVHHLGHFST HQ KIVDFSI+N+DTIFWS+F GVVGCLFM+LAARKA
Sbjct: 2   ATDHAAPTASEYIVHHLGHFSTKHQDKIVDFSIINMDTIFWSIFAGVVGCLFMYLAARKA 61

Query: 64  TSGVPGRFQAFVEMVVEMVEDQSKAIVHGDRTFIAPVALTVFVWVALMNSLDFLPVDLAS 123
           TSGVPGRFQA VEM+VEMV++Q+K+IVHGDRTFIAP+ALTVFVWVALMNSLDFLPVD+ S
Sbjct: 62  TSGVPGRFQAAVEMIVEMVDNQAKSIVHGDRTFIAPLALTVFVWVALMNSLDFLPVDMFS 121

Query: 124 SILGVFGLGEM--HHRIVPTADLNGTLGIALGVLALMLYYSVKIKGAGGFIHELFAAPFG 181
           +     GL  +  HHR+VPTADLNGT+GIALGV ALM++Y++KIKGAGGF+HELFAAPFG
Sbjct: 122 AFFHAVGLDSLITHHRVVPTADLNGTMGIALGVFALMIFYNIKIKGAGGFVHELFAAPFG 181

Query: 182 IWLAPFNLLLNIIEFAAKTVSLGMRLFGNMYAGELLFLLIALLGSTATAFGFIGHVIAGS 241
           IWLAPFNLLLN+IEFAAKTVSL MRLFGNMYAGELLFLLIALLGSTATAFGF GHV+AG+
Sbjct: 182 IWLAPFNLLLNMIEFAAKTVSLAMRLFGNMYAGELLFLLIALLGSTATAFGFFGHVVAGT 241

Query: 242 IWAIFHILIVLLQAFIFMMLTLVYLGQAHEAH 273
           +WAIFHILIV LQAFIFMMLTLVY+GQAHE+H
Sbjct: 242 LWAIFHILIVFLQAFIFMMLTLVYIGQAHESH 273


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.331    0.143    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 602,265
Number of extensions: 23716
Number of successful extensions: 96
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 191
Effective length of database: 917,867
Effective search space: 175312597
Effective search space used: 175312597
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 129 (54.3 bits)