BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4223.p (513 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980082|ref|YP_001355319.1| F-type H+-transporting ATPase a... 959 0.0 gi|152980499|ref|YP_001353128.1| FliI flagellum specific ATP syn... 137 1e-33 gi|152980404|ref|YP_001355317.1| F0F1 ATP synthase subunit beta ... 104 1e-23 >gi|152980082|ref|YP_001355319.1| F-type H+-transporting ATPase alpha chain [Janthinobacterium sp. Marseille] Length = 511 Score = 959 bits (2480), Expect = 0.0, Method: Compositional matrix adjust. Identities = 466/510 (91%), Positives = 489/510 (95%) Query: 1 MQLNASEISELIKSRIQGLGDTAEIRNQGTVISVSDGICRIHGLSDVMQGEMLEFPGNTF 60 MQLN SEISELIKSRIQGLGDTAEIRNQGTVISVSDGICRIHGLSDVMQGEMLEFPGNTF Sbjct: 1 MQLNPSEISELIKSRIQGLGDTAEIRNQGTVISVSDGICRIHGLSDVMQGEMLEFPGNTF 60 Query: 61 GLALNLERDSVGAVILGEYEHISEGDLVKCTGRILEVPIGPELKGRVVNALGQPIDGKGP 120 GLALNLERDSVGAVILGEYEHISEGD VKCTGRILEVPIGPEL GRVVNALGQPIDGKGP Sbjct: 61 GLALNLERDSVGAVILGEYEHISEGDTVKCTGRILEVPIGPELCGRVVNALGQPIDGKGP 120 Query: 121 INAKLTAPIEKIAPGVIARQSVSQPMQTGLKSIDSMVPVGRGQRELIIGDRQTGKTAVAI 180 IN KLT PIEKIAPGVIARQSV QPMQTG+K+ID+MVP+GRGQRELIIGDRQTGKTAVAI Sbjct: 121 INTKLTTPIEKIAPGVIARQSVDQPMQTGIKAIDAMVPIGRGQRELIIGDRQTGKTAVAI 180 Query: 181 DAIINQKGQNMTCIYVAIGQKASSVKNVVRALEAHGAMEYTIVVAATASESAAMQYVSAY 240 DAIINQKGQ +TCIYVAIGQKASS+KN+VRALE HGAMEYTIVVAATASESAAMQ+VSAY Sbjct: 181 DAIINQKGQGVTCIYVAIGQKASSIKNIVRALEQHGAMEYTIVVAATASESAAMQFVSAY 240 Query: 241 SGCAMGEYFRDRGQDALIVYDDLSKQAVAYRQVSLLLRRPPGREAYPGDVFYLHSRLLER 300 SGCAMGEYFRDRG+DALIVYDDLSKQAVAYRQVSLLLRRPPGREA+PGDVFYLHSRLLER Sbjct: 241 SGCAMGEYFRDRGEDALIVYDDLSKQAVAYRQVSLLLRRPPGREAFPGDVFYLHSRLLER 300 Query: 301 AARVNADYVEKFTNGEVKGQTGSLTALPIIETQAGDVSAFVPTNVISITDGQIFLETSLF 360 AARVNADYVE FT G VKG+TGSLTALPIIETQAGDVSAFVPTNVISITDGQIFLETSLF Sbjct: 301 AARVNADYVEAFTKGAVKGKTGSLTALPIIETQAGDVSAFVPTNVISITDGQIFLETSLF 360 Query: 361 NAGIRPAINAGISVSRVGGAAQTKVIKGLSGGIRTDLAQYRELAAFAQFASDLDEATRKQ 420 N+G+RPAINAGISVSRVGGAAQTKVIKGLSGGIRTDLAQYRELAAFAQFASDLD +TRKQ Sbjct: 361 NSGVRPAINAGISVSRVGGAAQTKVIKGLSGGIRTDLAQYRELAAFAQFASDLDASTRKQ 420 Query: 421 LDRGARVTELLKQAQYTPQSISIMAVTLFAVNKGYMDDVEVKKILAFESALHNFMKTSHA 480 LDRGARVTELLKQAQY P S S+MAV+LFAVNKGY DD+EVK++LAFES LH FMK+SHA Sbjct: 421 LDRGARVTELLKQAQYAPLSTSLMAVSLFAVNKGYFDDLEVKQVLAFESGLHGFMKSSHA 480 Query: 481 DLLKKIEDTKQLDKDAEAALAAAIADFKKS 510 LL+KIEDTK+L+KD EA LAAAIADFKKS Sbjct: 481 ALLQKIEDTKKLEKDDEAVLAAAIADFKKS 510 >gi|152980499|ref|YP_001353128.1| FliI flagellum specific ATP synthase [Janthinobacterium sp. Marseille] Length = 448 Score = 137 bits (346), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 90/281 (32%), Positives = 147/281 (52%), Gaps = 15/281 (5%) Query: 96 EVPIGPELKGRVVNALGQPIDGKGPINAKLTAPIEKIAPGVIARQSVSQPMQTGLKSIDS 155 +P+G EL GRV++ G+P+D GP+NA AP+ A ++R ++ + G+++I+S Sbjct: 103 HLPVGIELLGRVLDGAGRPLDNLGPLNAAHAAPLNVRAANPLSRAPITDVLDVGVRAINS 162 Query: 156 MVPVGRGQRELIIGDRQTGKTAVAIDAIINQKGQNMTCIYVAIGQKASSVKNVVRALEAH 215 M+ VGRGQR + GK+ V + + ++ + + IG++ VK + + Sbjct: 163 MLTVGRGQRMGLFAGSGVGKS-VLLGMMARYTTADVIVVGL-IGERGREVKEFIEQILGA 220 Query: 216 GAMEYTIVVAATASESAAMQYVSAYSGCAMGEYFRDRGQDALIVYDDLSKQAVAYRQVSL 275 + ++VVAA A M+ A A+ E+FRD G+D L++ D L++ A+A R+++L Sbjct: 221 EGLARSVVVAAPADTPPLMRLQGAAYATAIAEHFRDEGKDVLLIMDSLTRYAMAQREIAL 280 Query: 276 LLRRPPGREAYPGDVFYLHSRLLERAARVNADYVEKFTNGEVKGQTGSLTALPIIETQAG 335 + PP + YP VF L+ERA NG+ G GS+TA + T+ Sbjct: 281 AIGEPPATKGYPPSVFAKLPALVERAG-----------NGKEGG--GSITAFYTVLTEGD 327 Query: 336 DVSAFVPTNVISITDGQIFLETSLFNAGIRPAINAGISVSR 376 D + + +I DG I L SL AG PAI+ S+SR Sbjct: 328 DQQDPIADSARAILDGHIVLNRSLAEAGHYPAIDIEQSISR 368 >gi|152980404|ref|YP_001355317.1| F0F1 ATP synthase subunit beta [Janthinobacterium sp. Marseille] Length = 466 Score = 104 bits (259), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 80/314 (25%), Positives = 137/314 (43%), Gaps = 23/314 (7%) Query: 71 VGAVILGEYEHISEGDLVKCTGRILEVPIGPELKGRVVNALGQPIDGKGPINAKLTAPIE 130 V + LG + + G +++ TG + VP+G GR+++ LG PID GP++ + TA I Sbjct: 50 VRTIALGTSDGLRRGMIIQNTGNPITVPVGTATLGRIMDVLGNPIDECGPVSHERTASIH 109 Query: 131 KIAPGVIARQSVSQPMQTGLKSIDSMVPVGRGQRELIIGDRQTGKTAVAIDAIIN-QKGQ 189 + AP ++TG+K ID + P +G + + G GKT ++ I N K Sbjct: 110 RKAPAYDELSPSQDLLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELINNIAKAH 169 Query: 190 NMTCIYVAIGQKASSVKNVVRALE-------AHGAMEYTIVVAATASESAAMQYVSAYSG 242 + ++ +G++ + + + A +V +E + A +G Sbjct: 170 SGLSVFAGVGERTREGNDFYHEMADAKVVDLENPANSKVAMVYGQMNEPPGNRLRVALTG 229 Query: 243 CAMGEYFRDRGQDALIVYDDLSKQAVAYRQVSLLLRRPPGREAYPGDVFYLHSRLLERAA 302 M E FRD G+D L D++ + +A +VS LL R P Y + RL ER Sbjct: 230 LTMAEAFRDEGKDVLFFVDNIYRFTLAGTEVSALLGRMPSAVGYQPTLAEEMGRLQERIT 289 Query: 303 RVNADYVEKFTNGEVKGQTGSLTALPIIETQAGDVSAFVPTNVISITDGQIFLETSLFNA 362 +TGS+T++ + A D++ P + D + L + + Sbjct: 290 ST---------------KTGSITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASL 334 Query: 363 GIRPAINAGISVSR 376 GI PA++ S SR Sbjct: 335 GIYPAVDPLDSTSR 348 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.317 0.133 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,076,152 Number of extensions: 44718 Number of successful extensions: 153 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 149 Number of HSP's successfully gapped: 3 Length of query: 513 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 426 Effective length of database: 899,382 Effective search space: 383136732 Effective search space used: 383136732 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)