BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4222.p
         (290 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979965|ref|YP_001355318.1| F-type H+-transporting ATPase g...   519   e-149

>gi|152979965|ref|YP_001355318.1| F-type H+-transporting ATPase
           gamma chain [Janthinobacterium sp. Marseille]
          Length = 289

 Score =  519 bits (1336), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 244/289 (84%), Positives = 270/289 (93%)

Query: 1   MATGKEIRGKIKSVENTKKITKAMEMVAASKMRKAQDRMHAARPYSDKIRNIAANLSQAN 60
           MA+GKEIRGKIKSVENTKKITKAMEMVAASKMRKAQDRMHAARPYSDKIRNIAANLSQAN
Sbjct: 1   MASGKEIRGKIKSVENTKKITKAMEMVAASKMRKAQDRMHAARPYSDKIRNIAANLSQAN 60

Query: 61  PEYVHPFMVQQDTAKRVGFIVVTTDKGLCGGMNTNSLRLLTNKFRELEGQGKSIESVAIG 120
           PEY HPF+V+ D +K VGFI+VTTDKGLCGGMNTNSLR++T K RELE +GK +E+VAIG
Sbjct: 61  PEYTHPFLVKSDASKTVGFIIVTTDKGLCGGMNTNSLRIVTTKLRELEAEGKKVEAVAIG 120

Query: 121 NKGLGFLNRIGARVAANVTQLGDTPHLEKLIGPVKVLLDAYQEGKLDAVYLVYTKFINTM 180
           NKGLGFLNRIGARV ++  Q+GDTPHL+KLIGPVKV+LDAYQ+GKLDAVY+VYTKFINTM
Sbjct: 121 NKGLGFLNRIGARVVSHAVQIGDTPHLDKLIGPVKVMLDAYQDGKLDAVYVVYTKFINTM 180

Query: 181 KQEATLQQLLPLTSDKLKADEGAHSWDYIYEPDVQSVVDELLVRYVEALIYQAVAENMAS 240
           KQE  ++QLLPL  DKLKADE + +WDYIYEPD Q+V+DELLVRYVEALI+QAVAEN+AS
Sbjct: 181 KQEPMMEQLLPLAVDKLKADEDSLAWDYIYEPDAQTVIDELLVRYVEALIFQAVAENLAS 240

Query: 241 EQSARMVAMKAASDNAGSVIGELKLVYNKTRQAAITKELSEIVAGAAAV 289
           EQSARMVAMK+ASDNAGSVI ELKLVYNKTRQAAITKELSEIVAGAAAV
Sbjct: 241 EQSARMVAMKSASDNAGSVISELKLVYNKTRQAAITKELSEIVAGAAAV 289


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.315    0.129    0.350 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 578,094
Number of extensions: 21666
Number of successful extensions: 76
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 208
Effective length of database: 917,867
Effective search space: 190916336
Effective search space used: 190916336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)