BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4221.p (466 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980404|ref|YP_001355317.1| F0F1 ATP synthase subunit beta ... 914 0.0 gi|152980499|ref|YP_001353128.1| FliI flagellum specific ATP syn... 166 2e-42 gi|152980082|ref|YP_001355319.1| F-type H+-transporting ATPase a... 105 4e-24 >gi|152980404|ref|YP_001355317.1| F0F1 ATP synthase subunit beta [Janthinobacterium sp. Marseille] Length = 466 Score = 914 bits (2361), Expect = 0.0, Method: Compositional matrix adjust. Identities = 441/466 (94%), Positives = 459/466 (98%) Query: 1 MADGKIVQCIGAVVDVEFPRDAMPKVYDALKLEGSDLTLEVQQQLGDGVVRTIALGSSDG 60 MADGKIVQCIGAVVDVEFPR+AMPK+YDALK+ GS+LTLEVQQQLGDG+VRTIALG+SDG Sbjct: 1 MADGKIVQCIGAVVDVEFPRNAMPKIYDALKMAGSELTLEVQQQLGDGIVRTIALGTSDG 60 Query: 61 LRRGLTISNTGKPITVPVGTATLGRIMDVLGNPIDECGPVSHEQTASIHRKAPAYDELSP 120 LRRG+ I NTG PITVPVGTATLGRIMDVLGNPIDECGPVSHE+TASIHRKAPAYDELSP Sbjct: 61 LRRGMIIQNTGNPITVPVGTATLGRIMDVLGNPIDECGPVSHERTASIHRKAPAYDELSP 120 Query: 121 SQELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFAGVGE 180 SQ+LLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFAGVGE Sbjct: 121 SQDLLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFAGVGE 180 Query: 181 RTREGNDFYHEMAEAKVVDLENPTNSKVAMVYGQMNEPPGNRLRVALTGLTIAEGFRDEG 240 RTREGNDFYHEMA+AKVVDLENP NSKVAMVYGQMNEPPGNRLRVALTGLT+AE FRDEG Sbjct: 181 RTREGNDFYHEMADAKVVDLENPANSKVAMVYGQMNEPPGNRLRVALTGLTMAEAFRDEG 240 Query: 241 KDVLFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGRLQERITSTKTGSITSIQ 300 KDVLFFVDNIYR+TLAGTEVSALLGRMPSAVGYQPTLAEEMGRLQERITSTKTGSITSIQ Sbjct: 241 KDVLFFVDNIYRFTLAGTEVSALLGRMPSAVGYQPTLAEEMGRLQERITSTKTGSITSIQ 300 Query: 301 AVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAVDPLDSTSRQLDPQVVGQEHY 360 AVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAVDPLDSTSRQLDP VVGQ+HY Sbjct: 301 AVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAVDPLDSTSRQLDPLVVGQDHY 360 Query: 361 ETARAVQGTLQRYKELRDIIAILGMDELAPEDKLIVARARKMQRFLSQPFHVAEVFTGSP 420 +TARAVQGTLQRYKELRDIIAILGMDELAPEDKL+VARARKMQRFLSQPFHVAEVFTG+P Sbjct: 361 DTARAVQGTLQRYKELRDIIAILGMDELAPEDKLLVARARKMQRFLSQPFHVAEVFTGAP 420 Query: 421 GKYVSLKDTIKGFKMIASGELDHLPEQAFYMVGTIDEAIEKAKKIN 466 GKYVSLKDTIKGFKMIASGELDHLPEQAFYMVGTI+EAIEKAKK+N Sbjct: 421 GKYVSLKDTIKGFKMIASGELDHLPEQAFYMVGTIEEAIEKAKKLN 466 >gi|152980499|ref|YP_001353128.1| FliI flagellum specific ATP synthase [Janthinobacterium sp. Marseille] Length = 448 Score = 166 bits (421), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 115/360 (31%), Positives = 187/360 (51%), Gaps = 22/360 (6%) Query: 76 VPVGTATLGRIMDVLGNPIDECGPVSHEQTASIHRKAPAYDELSPSQELLETGIKVIDLV 135 +PVG LGR++D G P+D GP++ A ++ +A +P ++L+ G++ I+ + Sbjct: 104 LPVGIELLGRVLDGAGRPLDNLGPLNAAHAAPLNVRAANPLSRAPITDVLDVGVRAINSM 163 Query: 136 CPFAKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFAG-VGERTREGNDFYHEMAE 194 +G ++GLF G+GVGK+V L+ +A+ + + G +GER RE +F ++ Sbjct: 164 LTVGRGQRMGLFAGSGVGKSV----LLGMMARYTTADVIVVGLIGERGREVKEFIEQILG 219 Query: 195 AKVVDLENPTNSKVAMVYGQMNEPPGNRLRVALTGLTIAEGFRDEGKDVLFFVDNIYRYT 254 A+ + ++ +V + PP RL+ A IAE FRDEGKDVL +D++ RY Sbjct: 220 AEGL-------ARSVVVAAPADTPPLMRLQGAAYATAIAEHFRDEGKDVLLIMDSLTRYA 272 Query: 255 LAGTEVSALLGRMPSAVGYQPTLAEEMGRLQERITSTKT--GSITSIQAVYVPADDLTDP 312 +A E++ +G P+ GY P++ ++ L ER + K GSIT+ V DD DP Sbjct: 273 MAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGKEGGGSITAFYTVLTEGDDQQDP 332 Query: 313 SPATTFAHLDSTVVLSRDIASLGIYPAVDPLDSTSRQLDPQVVGQEHYETARAVQGTLQR 372 + A LD +VL+R +A G YPA+D S SR + + EH + R ++ R Sbjct: 333 IADSARAILDGHIVLNRSLAEAGHYPAIDIEQSISRAMH-NITTPEHQKQTRKLKQLTSR 391 Query: 373 YKELRDIIAI----LGMDELAPEDKLIVARARKMQRFLSQPFHVAEVFTGSPGKYVSLKD 428 Y+ RD+I++ G D + E +A K++ FL Q + S G+ SL D Sbjct: 392 YQRNRDLISVGAYSAGSDPVLDE---AIALNSKIESFLQQDITERCGISESLGQLASLFD 448 >gi|152980082|ref|YP_001355319.1| F-type H+-transporting ATPase alpha chain [Janthinobacterium sp. Marseille] Length = 511 Score = 105 bits (263), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 85/346 (24%), Positives = 149/346 (43%), Gaps = 32/346 (9%) Query: 50 VRTIALGSSDGLRRGLTISNTGKPITVPVGTATLGRIMDVLGNPIDECGPVSHEQTASIH 109 V + LG + + G T+ TG+ + VP+G GR+++ LG PID GP++ + T I Sbjct: 71 VGAVILGEYEHISEGDTVKCTGRILEVPIGPELCGRVVNALGQPIDGKGPINTKLTTPIE 130 Query: 110 RKAPAYDELSPSQELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELINNIAKAH 169 + AP + ++TGIK ID + P +G + + G GKT ++ I N K Sbjct: 131 KIAPGVIARQSVDQPMQTGIKAIDAMVPIGRGQRELIIGDRQTGKTAVAIDAIIN-QKGQ 189 Query: 170 SGLSVFAGVGERTREGNDFYHEMAEAKVVDLENPTNSKVAMVYGQMNEPPGNRLRVALTG 229 ++ +G++ + + + ++ +V +E + A +G Sbjct: 190 GVTCIYVAIGQKASSIKNIVRALEQHGAMEY-------TIVVAATASESAAMQFVSAYSG 242 Query: 230 LTIAEGFRDEGKDVLFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGRLQERIT 289 + E FRD G+D L D++ + +A +VS LL R P + + RL ER Sbjct: 243 CAMGEYFRDRGEDALIVYDDLSKQAVAYRQVSLLLRRPPGREAFPGDVFYLHSRLLERAA 302 Query: 290 ST---------------KTGSITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASL 334 KTGS+T++ + A D++ P + D + L + + Sbjct: 303 RVNADYVEAFTKGAVKGKTGSLTALPIIETQAGDVSAFVPTNVISITDGQIFLETSLFNS 362 Query: 335 GIYPAVDPLDSTSRQLDPQVVGQEHYETARAVQG----TLQRYKEL 376 G+ PA++ S SR V G + + + G L +Y+EL Sbjct: 363 GVRPAINAGISVSR-----VGGAAQTKVIKGLSGGIRTDLAQYREL 403 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.317 0.135 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,010,089 Number of extensions: 41286 Number of successful extensions: 125 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 121 Number of HSP's successfully gapped: 3 Length of query: 466 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 379 Effective length of database: 899,382 Effective search space: 340865778 Effective search space used: 340865778 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)