BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4220.p
         (140 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980662|ref|YP_001355316.1| F0F1 ATP synthase subunit epsil...   234   1e-63

>gi|152980662|ref|YP_001355316.1| F0F1 ATP synthase subunit epsilon
           [Janthinobacterium sp. Marseille]
          Length = 140

 Score =  234 bits (598), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 118/140 (84%), Positives = 131/140 (93%)

Query: 1   MAHTIHVDVVSAEEEIFSGEAEFVALPGEAGELGIYPRHTPLITRIKPGAVRIKIPGQAH 60
           MAHT+ VDVVSAEEEIFSGEAEFVALPGE+GELGI P HTPLITRI+PGAVRIK+ GQA 
Sbjct: 1   MAHTMRVDVVSAEEEIFSGEAEFVALPGESGELGILPGHTPLITRIRPGAVRIKVTGQAE 60

Query: 61  EEFVFVAGGLLEVQPDAVTVLADTAIRGADLDEAKAAEAKRLAEEALVNRDSKIDHAAAQ 120
           +EFVFVAGG+LEVQP  VTVLADTAIRG DLDEAKAAEAK+LAEEALVN++SKID+A AQ
Sbjct: 61  DEFVFVAGGILEVQPHVVTVLADTAIRGGDLDEAKAAEAKQLAEEALVNKESKIDYAQAQ 120

Query: 121 AELAAAVAQLAAIQKLRQKR 140
           AELA+A+AQLAAIQ+LRQKR
Sbjct: 121 AELASAIAQLAAIQRLRQKR 140


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.316    0.132    0.356 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 241,631
Number of extensions: 8206
Number of successful extensions: 25
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 1
Length of query: 140
Length of database: 1,221,021
Length adjustment: 74
Effective length of query: 66
Effective length of database: 947,443
Effective search space: 62531238
Effective search space used: 62531238
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 125 (52.8 bits)