BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4218.p
         (270 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979926|ref|YP_001355314.1| hypothetical protein mma_3624 [...   352   1e-98

>gi|152979926|ref|YP_001355314.1| hypothetical protein mma_3624
           [Janthinobacterium sp. Marseille]
          Length = 269

 Score =  352 bits (903), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 163/260 (62%), Positives = 196/260 (75%)

Query: 9   FMVHPKYLLKESDATTKPLSSGNKEADRATVQRLAAEIGLQQQMLYAGHKHKVLVVLQGM 68
           F    K  + ++ A  KPLSSG+KE D+  V++ A +I   Q++LYA  KHK+L+VLQGM
Sbjct: 8   FRADKKQKVADAAAGEKPLSSGDKEQDKLLVEQQAQQIAELQEILYAERKHKILIVLQGM 67

Query: 69  DTSGKDGTVNDVFAAVNPQGIRIANFKGPTAIELAHDYLWRVHAQVPVAGEIAVFNRSHY 128
           DTSGKDGTV  VF  ++P G+    FK P+  E AHD+LWR+H QVP  GE  +FNRSHY
Sbjct: 68  DTSGKDGTVRGVFGKIDPLGVSSVAFKSPSTEEKAHDFLWRIHKQVPALGEFTIFNRSHY 127

Query: 129 EDVLITRVHDWIDDKECKRRYRQINDFERMLWETGTVVLKFFLHISKAEQKARLQSRIDD 188
           EDVLITRVHDWIDDKECKRRY+ I DFERML ETGTV++KFFLHIS  EQK RL+ RI D
Sbjct: 128 EDVLITRVHDWIDDKECKRRYQHIRDFERMLSETGTVIMKFFLHISADEQKKRLEERIAD 187

Query: 189 PNKHWKFDPQDLAERKYWDAYQLRYQEVLRATSTLHAPWYVVPADSKTHRNLLVANVILE 248
           PNKHWKFDP DL ERKYW AYQ +Y+EV+R T   HAPWYV+PADSKTHRNL++++++LE
Sbjct: 188 PNKHWKFDPADLEERKYWGAYQDQYEEVIRETDADHAPWYVIPADSKTHRNLVISSIVLE 247

Query: 249 TLQKLKLKFPDPKPELKNLK 268
            L KLK  FP   PE   LK
Sbjct: 248 KLNKLKPAFPPGNPEFSKLK 267


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.135    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 637,020
Number of extensions: 25379
Number of successful extensions: 72
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 188
Effective length of database: 917,867
Effective search space: 172558996
Effective search space used: 172558996
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)