BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4216.p
         (365 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980188|ref|YP_001355297.1| uroporphyrinogen decarboxylase ...   593   e-171

>gi|152980188|ref|YP_001355297.1| uroporphyrinogen decarboxylase
           [Janthinobacterium sp. Marseille]
          Length = 360

 Score =  593 bits (1528), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 284/356 (79%), Positives = 317/356 (89%)

Query: 8   STFAPLTNDTFLRALLRQPTDYTPLWLMRQAGRYLPEYRATRARAGSFMGLATNPDYATE 67
           + FAPL NDTFLRALLRQPT+YTPLWLMRQAGRYLPEYRATRARAGSF+GLA NPD+ATE
Sbjct: 3   TQFAPLQNDTFLRALLRQPTEYTPLWLMRQAGRYLPEYRATRARAGSFLGLAKNPDFATE 62

Query: 68  VTLQPLERYPLDAAILFSDILTVPDAMGLGLYFADGEGPKFERPLRDEAAVKALQAPDLG 127
           VTLQPL+RY LDAAILFSDILTVPDAMGLGLYF +GEGPKFERPLRDE AV+AL+ P+LG
Sbjct: 63  VTLQPLDRYKLDAAILFSDILTVPDAMGLGLYFIEGEGPKFERPLRDEKAVQALKVPELG 122

Query: 128 KLDYVFKAVTQIRRELHGRVPLIGFSGSPWTLACYMVEGGGSDDFRLVKSMLYGRPDLMH 187
            L YVF AVTQIR EL GRVPLIGF+GSPWTLACYMVEGGGSDDFR VK+MLY RPDLMH
Sbjct: 123 SLQYVFDAVTQIRTELKGRVPLIGFTGSPWTLACYMVEGGGSDDFRTVKAMLYNRPDLMH 182

Query: 188 HILKTNADAVAAYLNAQIAAGAQAVMIFDTWGGALADGIYQQFSLAYMQQVVSHLQRQQD 247
           HIL+TNA  VAAYLNAQI AGAQAVM+FDTWGGALADG YQQFSL YM++V+ H++ ++D
Sbjct: 183 HILQTNALTVAAYLNAQIDAGAQAVMMFDTWGGALADGAYQQFSLHYMREVMKHVKTEKD 242

Query: 248 GQPIPVIVFTKGGGLWLEQIAAIGADAVGLDWTVNLGEARRRVGDKVALQGNLDPNVLFA 307
           G  IP IVFTKGGGLWL++IAA+GADAVGLDWTVNLG AR +VG++VALQGNLDP++LFA
Sbjct: 243 GVRIPSIVFTKGGGLWLKEIAAVGADAVGLDWTVNLGAARAKVGERVALQGNLDPSILFA 302

Query: 308 GDAAIRAEVRKLLESFGRPGAGSGHVFNLGHGISQHTPPDAVATLAQAVHEISREM 363
               IRAEV K+LESFG+  AGSGHVFNLGHGISQ TPP+AV  L  AVHE+SR +
Sbjct: 303 QPDQIRAEVAKVLESFGKHSAGSGHVFNLGHGISQFTPPEAVTVLVDAVHELSRPL 358


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.137    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 929,234
Number of extensions: 42439
Number of successful extensions: 112
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 281
Effective length of database: 910,473
Effective search space: 255842913
Effective search space used: 255842913
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)