BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4215.p
         (713 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980398|ref|YP_001355296.1| primosomal protein N' [Janthino...   980   0.0  

>gi|152980398|ref|YP_001355296.1| primosomal protein N'
           [Janthinobacterium sp. Marseille]
          Length = 683

 Score =  980 bits (2534), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/718 (69%), Positives = 573/718 (79%), Gaps = 40/718 (5%)

Query: 1   VEQRLLQVALDTPLHTVFDYRWQAATEDEPI-PAIGQLVVVPFGRREAVGVVVGHVAQTE 59
           +E  +L+VALDTPL   FDY W   TE EP  P  GQL +VPFGRRE VG+VV     T+
Sbjct: 1   MEHCILKVALDTPLDFCFDYVW-VLTEAEPTRPLPGQLALVPFGRREVVGLVVAVHDTTD 59

Query: 60  LEAGKIKDVIAVRHQLPPLSAHWLALCGFAADYYQRPLGEVMLPGLPKNLRALTTVALDK 119
           +   K+K  IAVR QL PLSA W+ALC FAADYYQRPLGEV +PGLPKNLRAL T +LDK
Sbjct: 60  VPLDKLKAAIAVRTQLAPLSAEWIALCAFAADYYQRPLGEVAIPGLPKNLRALKTTSLDK 119

Query: 120 ALKALGRLTAPKKSKARRKTDVHSEVQADAPASIPPPDPLQLGAAPPLNAAQQEAVQAIA 179
           A+K LG+L A           VH               P+   A P LN AQQ+A  AIA
Sbjct: 120 AVKKLGKLDA-----------VHDAT------------PI---AMPQLNEAQQQAADAIA 153

Query: 180 GAQGFAPLLLYGVTGSGKTEVYLQAAAAILQRAAQEAGQSQPGQAAPAQILVLVPEINLT 239
            A GFAP LLYGVTGSGKTEVYLQAAA IL  + ++          PAQIL+LVPEINLT
Sbjct: 154 TASGFAPTLLYGVTGSGKTEVYLQAAAQILAHSKEDDN--------PAQILILVPEINLT 205

Query: 240 PQLEGNIRARFPHLNVVALHSGLAEGERARNWLAAHLGQAHIVLGTRLAILASLPTLKLI 299
           PQLE N+RARFP + V  LHSGLAEGER  +WLAAHLGQA I+LGTRLAIL+SLP LKLI
Sbjct: 206 PQLEANVRARFPGVMVATLHSGLAEGERMTHWLAAHLGQARIILGTRLAILSSLPQLKLI 265

Query: 300 VIDEEHDPSYKQQEGLRYSARDLAVWRAHQLGIPVVLGSATPSLETWQHAQAGRYRRLEL 359
           ++DEEHDPSYKQQEGLRYSARDLAVWRAHQL IP+VLGSATPSLETW HAQ+GRYR+LEL
Sbjct: 266 IVDEEHDPSYKQQEGLRYSARDLAVWRAHQLSIPIVLGSATPSLETWHHAQSGRYRKLEL 325

Query: 360 RQRAAQQAVLPSVKVIDMERDKP----VDGLTSTLVAAVRKRLEQGEQSLLFLNRRGYAP 415
           R+RA + AVLP V +ID+ER  P     +G+++TL+AA++ R+E+GEQSLLFLNRRGYAP
Sbjct: 326 RERAVKDAVLPKVGLIDLERKAPREQMTEGISATLIAALKLRMERGEQSLLFLNRRGYAP 385

Query: 416 VLACDACGWISNCMRCDAFMVVHRPERRLRCHHCSLELQIPRACPTCGNVDLQPLGRGTQ 475
           V+ACD+CGWISNC RC AF+V+H+ ++RLRCHHC  E +IP++CPTCGNVDLQPLGRGTQ
Sbjct: 386 VIACDSCGWISNCTRCSAFLVLHKLDKRLRCHHCGFEQRIPKSCPTCGNVDLQPLGRGTQ 445

Query: 476 RVEEGLQAIFPEARVLRIDADSTRLKGSAQSAFDSVHRGEVDILIGTQMVAKGHDFKKLT 535
           RVEE LQ IFPEAR++RIDADSTR KGSAQ AFD+VHRGEVDILIGTQMVAKGHDF+ LT
Sbjct: 446 RVEESLQLIFPEARIMRIDADSTRRKGSAQEAFDTVHRGEVDILIGTQMVAKGHDFQNLT 505

Query: 536 LVGVLNPDTALFSHDYRASERLFAQLMQVAGRAGRAGLSADGSSGEVLIQTRYPHHPLYQ 595
           LVGVLNPDTALFSHDYRASERLFAQLMQVAGRAGR      GS+ EVLIQTRYP HPLY 
Sbjct: 506 LVGVLNPDTALFSHDYRASERLFAQLMQVAGRAGRVAQKEGGSASEVLIQTRYPQHPLYA 565

Query: 596 AVMRHDYDGFAGDLLQERRQAYFPPFMYQALLRAEARELETAMDFLKEAAHLLEAPAITI 655
           AV  HDYD FA +LL+ER+QA+FPPF+YQALLRAEA+E++ A+DFL +A   ++ P IT+
Sbjct: 566 AVRTHDYDTFATELLEERQQAHFPPFIYQALLRAEAKEIKIALDFLHDAIACVDYPGITM 625

Query: 656 NEPIPMTLVRVANVERAQLLLECPSRPALQGFLKQWLALLRQVKTRVRWSLEVDPVDI 713
           N+PIPMT+ RVANV+RAQLL+EC SRPALQ FLK W+A LR++KTRVRWSLEVDPVDI
Sbjct: 626 NDPIPMTMTRVANVDRAQLLVECTSRPALQAFLKIWIAALREMKTRVRWSLEVDPVDI 683


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.136    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,544,668
Number of extensions: 60590
Number of successful extensions: 198
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 195
Number of HSP's successfully gapped: 1
Length of query: 713
Length of database: 1,221,021
Length adjustment: 90
Effective length of query: 623
Effective length of database: 888,291
Effective search space: 553405293
Effective search space used: 553405293
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 133 (55.8 bits)