BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4214.p
         (577 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980236|ref|YP_001351803.1| arginyl-tRNA synthetase [Janthi...   916   0.0  

>gi|152980236|ref|YP_001351803.1| arginyl-tRNA synthetase
           [Janthinobacterium sp. Marseille]
          Length = 577

 Score =  916 bits (2367), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/577 (76%), Positives = 500/577 (86%)

Query: 1   MLAQQKQRISDLFSTALQPLLAGSDLTPTITLERPRDASHGDIACNIAMQLAKPLKKNPR 60
           MLA QKQR+++LF  A+ PL+A +DL PTITLERPRD SHGD+ACN+AMQ+AKPLKKNPR
Sbjct: 1   MLAAQKQRLTELFQAAVAPLVASTDLQPTITLERPRDPSHGDVACNLAMQIAKPLKKNPR 60

Query: 61  ELAQAIVTAVMADPAREGLVESVEIAGPGFINLRVAAAAKQAVVKVIHEQGEAFGRGTAG 120
           E+AQA+  A++ +PA   L+E+ +IAGPGFINLR+ AA++QAVVK + +QG  FG+   G
Sbjct: 61  EVAQALAAALLDNPANRDLIEAADIAGPGFINLRLTAASRQAVVKTVLQQGAEFGKSNLG 120

Query: 121 AGQKVLVEFVSANPTGPLHVGHGRQGALGDALSSLLEVQGFEVLREFYYNDAGVQIATLA 180
             +KV++EFVSANPTGPLHVGHGRQGALGDA+SSL + QG++V REFYYNDAGVQIATLA
Sbjct: 121 NDKKVIIEFVSANPTGPLHVGHGRQGALGDAMSSLFQAQGYDVTREFYYNDAGVQIATLA 180

Query: 181 TSVQARARGFKPGDAEWPESAYNGDYIADIARDFLDQKTVSASDGEPVTGSGNVEDMESI 240
           TSVQAR +G KPG   WPESAYNGDYI DIA DFL +KTVSAS+GEPVT SG++ D+ESI
Sbjct: 181 TSVQARGKGLKPGVEGWPESAYNGDYIQDIANDFLAKKTVSASNGEPVTASGDINDIESI 240

Query: 241 RRFAVAYLRHEQDLDLQAFGVKFDNYYLESSLYADGKVAAAVDALVAAGKTYEQDGALWL 300
           R+F+V YLR EQDLDLQAFGVKFDNYYLESSLYADGKV   VDAL+ A KTYE DGALWL
Sbjct: 241 RQFSVTYLRREQDLDLQAFGVKFDNYYLESSLYADGKVEKTVDALIKADKTYELDGALWL 300

Query: 301 RTTDYGDDKDRVMKKTDGTYTYFVPDVAYHINKWQRGYGKVINIQGSDHHGTIARVRAGL 360
           RTTDY DDKDRVMKK+DGTYTYFVPDVAYH  KWQRG+ + IN+QGSDHHGTIARVRAGL
Sbjct: 301 RTTDYRDDKDRVMKKSDGTYTYFVPDVAYHTVKWQRGFTQAINVQGSDHHGTIARVRAGL 360

Query: 361 QAVGVGIPLGYPDYVLHKMVTVMRNGEEVKISKRAGSYVTLRDLIEWSAGEPVEGQERDL 420
           QA+ +GIP GYPDYVLHKMVTVMRNGEEVKISKRAGSYVTLRDLIEWS GE V+G+ RDL
Sbjct: 361 QALDIGIPQGYPDYVLHKMVTVMRNGEEVKISKRAGSYVTLRDLIEWSNGEVVDGEVRDL 420

Query: 421 TRGRDAVRFFLISRKADTEFVFDVDLALAQSDENPVYYVQYAHARICTVLGKSGVDEEAL 480
           TRGRDAVRFFLISRKADTEFVFDVD+AL Q DENPVYYVQYAHARIC+VL +    +EA 
Sbjct: 421 TRGRDAVRFFLISRKADTEFVFDVDIALTQGDENPVYYVQYAHARICSVLAQWTDGDEAS 480

Query: 481 KTSADLSLLTAPREASLLAKLAEYPDMLAHALQELGPHQVAFYLRDLAGELHSYYNAERV 540
               DLS LTA RE +LLAKLAEYP+ L  AL+ELGPHQVAFYLRDLAGELHSYYNAERV
Sbjct: 481 LDKVDLSPLTAARETALLAKLAEYPETLQKALEELGPHQVAFYLRDLAGELHSYYNAERV 540

Query: 541 LVDDVPTRSARLALLSATRQVLRNGLALLGVSAPARM 577
           LVDD   + AR+AL+SATRQVLRNGLAL+GVSAPARM
Sbjct: 541 LVDDEALKMARIALMSATRQVLRNGLALIGVSAPARM 577


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.134    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,328,880
Number of extensions: 55525
Number of successful extensions: 171
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 171
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 1,221,021
Length adjustment: 88
Effective length of query: 489
Effective length of database: 895,685
Effective search space: 437989965
Effective search space used: 437989965
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)