BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4213.p
         (221 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982022|ref|YP_001351804.1| hypothetical protein mma_0114 [...   145   3e-36

>gi|152982022|ref|YP_001351804.1| hypothetical protein mma_0114
           [Janthinobacterium sp. Marseille]
          Length = 198

 Score =  145 bits (365), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 96/196 (48%), Positives = 118/196 (60%), Gaps = 24/196 (12%)

Query: 30  AVGVALMITKSPIPFVNKV-ARPERTDPTP---AQAADPNRPLYGNRDIAREAARDQQQS 85
           AVGVALMI+K+P+PF NK  A+PER+   P      +DPN+PLYG +             
Sbjct: 23  AVGVALMISKTPLPFTNKTGAQPERSTQLPPATNDLSDPNKPLYGKKQ------------ 70

Query: 86  QTPVPPNTATAQPVPPVAPAPQASTPAATAPSKPTETASKPAATTPSASAAKNDTNDDKW 145
                P  A A      A    A+TP A    K   TA+K  A     +AAK   +D+KW
Sbjct: 71  -----PKPAEATEPAAPAAPATATTPGAPVVDK--STAAKEKAQAKVEAAAKA-ESDEKW 122

Query: 146 TYFLQTGAFRDQADAESARAKLALLGFEAKVTERSADSGVLYRVRIGPFEHAEAMNRTRS 205
            Y+LQ GAFR++ADAE+ +AKLALLGFEA V+   AD+G L+RVRIGPF   E MNR R 
Sbjct: 123 IYYLQAGAFRERADAENMKAKLALLGFEASVSAYQADTGALHRVRIGPFGQLETMNRVRG 182

Query: 206 KLSDNGVDAAIVRIPK 221
           KLSDNGVD A+VRI K
Sbjct: 183 KLSDNGVDVAVVRIGK 198


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.312    0.127    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 313,572
Number of extensions: 8583
Number of successful extensions: 32
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 1
Length of query: 221
Length of database: 1,221,021
Length adjustment: 80
Effective length of query: 141
Effective length of database: 925,261
Effective search space: 130461801
Effective search space used: 130461801
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 128 (53.9 bits)