BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4212.p
         (235 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982446|ref|YP_001351805.1| thiol:disulfide interchange pro...   300   4e-83

>gi|152982446|ref|YP_001351805.1| thiol:disulfide interchange
           protein DsbA [Janthinobacterium sp. Marseille]
          Length = 219

 Score =  300 bits (769), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 143/222 (64%), Positives = 171/222 (77%), Gaps = 4/222 (1%)

Query: 1   MRFHQKLLAAVSFGLLAMTASVGASASPANPQVGSDYRVLEQAQPTDSGNKVEVTEFFWF 60
           MRF Q LLA  S  L A TA     ASP  P  G+DYR LE+AQ  DSG KVEVTEFFW+
Sbjct: 1   MRFIQHLLAVASLSLFAATAG----ASPTAPVNGTDYRTLEKAQQVDSGKKVEVTEFFWY 56

Query: 61  DCPHCAAWDPSLTAWVKKQGDKINFKKVPVAFRDTFVPQQKLYYTLEAMGKAEELTPKIF 120
            CPHC+A +PSL AWVKKQGDKINFK+VPVAFRD+F+PQQKLYY+LEA+G    L  K+F
Sbjct: 57  SCPHCSALEPSLEAWVKKQGDKINFKRVPVAFRDSFIPQQKLYYSLEALGLVNSLHGKVF 116

Query: 121 RAIHVDGERINTDKTILAYIEKIGLDKQKFLDLYNSFGIQTKARRAAQLQEAYKVDGVPM 180
           RAIHVD + ++TDK I  +I K G+D +KF ++YNSFGIQ+K +RA QLQ AYKVDGVPM
Sbjct: 117 RAIHVDRQPLDTDKQIADFIAKQGVDAKKFAEVYNSFGIQSKVQRATQLQGAYKVDGVPM 176

Query: 181 IAIDGRYVTSPAVVGVALANQPESMQQAAALQVMDHLVAKVA 222
           IAIDGRY+TSP++VG +L N+PE++   A LQVMD LV K A
Sbjct: 177 IAIDGRYITSPSIVGASLGNRPEAILHEATLQVMDWLVTKSA 218


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.131    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 502,783
Number of extensions: 19972
Number of successful extensions: 69
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 1,221,021
Length adjustment: 80
Effective length of query: 155
Effective length of database: 925,261
Effective search space: 143415455
Effective search space used: 143415455
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)