BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4211.p (268 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980907|ref|YP_001351806.1| short chain dehydrogenase [Jant... 360 e-101 gi|152980003|ref|YP_001353169.1| short chain dehydrogenase [Jant... 95 6e-21 gi|152981275|ref|YP_001354152.1| short-chain alcohol dehydrogena... 84 8e-18 gi|152981443|ref|YP_001353048.1| 3-oxoacyl-[acyl-carrier protein... 80 1e-16 gi|152981015|ref|YP_001352800.1| Short-chain dehydrogenase [Jant... 74 8e-15 >gi|152980907|ref|YP_001351806.1| short chain dehydrogenase [Janthinobacterium sp. Marseille] Length = 263 Score = 360 bits (924), Expect = e-101, Method: Compositional matrix adjust. Identities = 181/261 (69%), Positives = 208/261 (79%) Query: 6 VVAAQERVFLTGASSGIGMALASAYARRGAVLGLVARRAAELEALRASLPHPERHRIYVL 65 + A ++RVF+TGASSG+G ALA YA++GAVLGLVARR L+ L+A+LP+ H++Y L Sbjct: 1 MTANRQRVFITGASSGLGAALARQYAQQGAVLGLVARRNEVLQELKAALPNAAEHQVYAL 60 Query: 66 DVTDHAALAAAAEAFMAEFGMADVVIANAGISQGTLTEYQEDLAAFERILAVNVTATFAT 125 DV DHAALA AA F+ D+VIANAGIS+GTLTEY EDL FE++ A NVTAT AT Sbjct: 61 DVNDHAALAQAAADFINHAQGIDIVIANAGISRGTLTEYAEDLQVFEQVFATNVTATVAT 120 Query: 126 FTPFVARMKAQPEAQRRRCRLVGIGSVAGIRGLPGAGAYSASKAAVISYCESLRVELNAS 185 F+PF+A M+ Q A CRLVGIGSVAGIRGLPGAGAYSASK+AVISYCESLRVEL S Sbjct: 121 FSPFIATMQTQAAAGHTNCRLVGIGSVAGIRGLPGAGAYSASKSAVISYCESLRVELKKS 180 Query: 186 GIKVVTIAPGYIDTPMTRVNSYRMPFLMPVERFAQRAVQSIAEGVSYRVIPWQMGVVAKL 245 GIKVVTIAPGYIDTPMT+VN Y MPFLMPV +FA+ A +IA G SYRVIPWQMGVVAK+ Sbjct: 181 GIKVVTIAPGYIDTPMTQVNDYAMPFLMPVGKFAEVATATIAAGCSYRVIPWQMGVVAKV 240 Query: 246 LRLLPNWLYDMAFARAPHKKR 266 LRLLPNW YD FA AP K R Sbjct: 241 LRLLPNWAYDFLFANAPRKAR 261 >gi|152980003|ref|YP_001353169.1| short chain dehydrogenase [Janthinobacterium sp. Marseille] Length = 272 Score = 94.7 bits (234), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 67/193 (34%), Positives = 100/193 (51%), Gaps = 7/193 (3%) Query: 14 FLTGASSGIGMALASAYARRGAVLGLVARRAAELEALRASLP-HPERHRIYVLDVTDHAA 72 +TGASSG+G A A GA + L +RR L+ LRA + ++ LDVTD+A+ Sbjct: 27 LVTGASSGLGARFAKVLAMAGAQVILASRRVDRLKELRAEIEAEGGAAQVVSLDVTDYAS 86 Query: 73 LAAAAEAFMAEFGMADVVIANAGIS--QGTLTEYQEDLAAFERILAVNVTATFATFTPFV 130 + +A E G D+++ N+G+S Q + ED A ++ N F Sbjct: 87 IKSAIAHAETETGAIDILVNNSGVSASQRLVDVTPEDYA---HMMDTNQRGAFFVAQEVA 143 Query: 131 ARMKAQPEAQ-RRRCRLVGIGSVAGIRGLPGAGAYSASKAAVISYCESLRVELNASGIKV 189 RM A+ + +++ R++ IGSVAG+R +P G Y SKAAV+ +++ VE GI Sbjct: 144 KRMIARHKGDPKKQHRIINIGSVAGLRVVPELGLYCMSKAAVVHMTKAMAVEWGKFGINT 203 Query: 190 VTIAPGYIDTPMT 202 I PGYI T M Sbjct: 204 NAICPGYIGTEMN 216 >gi|152981275|ref|YP_001354152.1| short-chain alcohol dehydrogenase [Janthinobacterium sp. Marseille] Length = 248 Score = 84.0 bits (206), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 59/183 (32%), Positives = 89/183 (48%), Gaps = 7/183 (3%) Query: 13 VFLTGASSGIGMALASAYARRGAVLGLVARRAAELEALRASLPHPERHRIYVLDVTDHAA 72 V +TGA+SG G +A +A+ G + RR L+AL A + P + +DVTD + Sbjct: 3 VLVTGATSGFGAEMARKFAQHGHKVIATGRRQDRLDALAAEI-GPSVLTV-AMDVTDKES 60 Query: 73 LAAAAEAFMAEFGMADVVIANAGISQGTLTEYQEDLAAFERILAVNVTATFATFTPFVAR 132 +AAA E+ DV+I NAG++ G L +E ++ N V R Sbjct: 61 IAAALAGLPPEWKEIDVLINNAGLALGVAPAQSASLEQWETMIETNCKGLVT-----VTR 115 Query: 133 MKAQPEAQRRRCRLVGIGSVAGIRGLPGAGAYSASKAAVISYCESLRVELNASGIKVVTI 192 + +R R ++ I S AG PGA Y A+KA V + +LR +L +G++ I Sbjct: 116 LLLPEMLKRNRGTIINISSSAGAYAYPGANVYGATKAFVDQFTRNLRADLVGTGVRASNI 175 Query: 193 APG 195 APG Sbjct: 176 APG 178 >gi|152981443|ref|YP_001353048.1| 3-oxoacyl-[acyl-carrier protein] reductase [Janthinobacterium sp. Marseille] Length = 247 Score = 80.1 bits (196), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 66/192 (34%), Positives = 96/192 (50%), Gaps = 12/192 (6%) Query: 14 FLTGASSGIGMALASAYARRGAVLGLVARRAAELEALRASLPHPERHRIYVLDVTDHAAL 73 +TGAS GIG A+A A+ GA + A + A+ L + + VLDV D A Sbjct: 12 LVTGASRGIGRAIAQELAKLGAKVIGTATSESGAAAISEYLGNGGKG--VVLDVNDAARS 69 Query: 74 AAAAEAFMAEFGMADVVIANAGISQGTLTEYQEDLAAFERILAVNVTATFATFTPFVAR- 132 A + EFG +++ NAGI+Q L +D ++ ++A N+TA + V R Sbjct: 70 VALIDEIQKEFGAVSILVNNAGITQDQLAMRMKD-EEWDSVIATNLTA-VGRLSRAVLRG 127 Query: 133 -MKAQPEAQRRRCRLVGIGSVAGIRGLPGAGAYSASKAAVISYCESLRVELNASGIKVVT 191 MKA + R++ I SV G G G Y+A+KA V +L E+ + I V Sbjct: 128 MMKA------KTGRIINITSVVGSSGNAGQMNYAAAKAGVAGMSRALAREIGSRNITVNC 181 Query: 192 IAPGYIDTPMTR 203 IAPG+IDT MT+ Sbjct: 182 IAPGFIDTDMTK 193 >gi|152981015|ref|YP_001352800.1| Short-chain dehydrogenase [Janthinobacterium sp. Marseille] Length = 266 Score = 73.9 bits (180), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 69/190 (36%), Positives = 95/190 (50%), Gaps = 9/190 (4%) Query: 14 FLTGASSGIGMALASAYARRGAVLGLVARRAAELEALRASLPHPERHRIYVL--DVTDHA 71 +TGAS+GIG A ARRG L LVAR A +EAL ASL I V+ D+T A Sbjct: 14 LITGASTGIGAVYADRLARRGHNLVLVARNGARMEALAASLRQETGVEIEVIVADLTKAA 73 Query: 72 ALAAAAEAFMAEFGMADVVIANAGISQGTLTEYQEDLAAFERILAVNVTATFATFTPFVA 131 L A EA + + ++I NAG + E D+ A E ++ +NVTA V Sbjct: 74 DL-AKVEARLRDQRDVGILINNAGAAAPGGFET-SDVEAQENLIKLNVTALTRLGAAVVP 131 Query: 132 RMKAQPEAQRRRCRLVGIGSVAGIRGLPGAGAYSASKAAVISYCESLRVELNASGIKVVT 191 R AQ + +V I SV + G Y A+KA V++Y ++L+VEL A G+ V Sbjct: 132 RFLAQGQGA-----IVNIASVVALAPEFPLGVYGATKAYVLAYSQALQVELGARGLYVQA 186 Query: 192 IAPGYIDTPM 201 + P T + Sbjct: 187 VLPAATRTEI 196 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.323 0.134 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 479,840 Number of extensions: 15295 Number of successful extensions: 132 Number of sequences better than 1.0e-08: 20 Number of HSP's gapped: 110 Number of HSP's successfully gapped: 20 Length of query: 268 Length of database: 1,221,021 Length adjustment: 82 Effective length of query: 186 Effective length of database: 917,867 Effective search space: 170723262 Effective search space used: 170723262 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 129 (54.3 bits)