BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4210.p
         (317 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979922|ref|YP_001351834.1| methionyl-tRNA formyltransferas...   446   e-126

>gi|152979922|ref|YP_001351834.1| methionyl-tRNA formyltransferase
           [Janthinobacterium sp. Marseille]
          Length = 316

 Score =  446 bits (1146), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 229/316 (72%), Positives = 264/316 (83%), Gaps = 1/316 (0%)

Query: 1   MKIIFAGTPEFAAVALEALYAAGHQITLVLTQPDRPAGRGMQLQASPVKQCALKHGTPVA 60
           MKIIFAGTPEFAAVAL AL+AAG +I LVLTQPDRPAGRGMQL AS VKQ AL H  PVA
Sbjct: 1   MKIIFAGTPEFAAVALAALHAAGFEIPLVLTQPDRPAGRGMQLHASAVKQFALAHDIPVA 60

Query: 61  QPVSLRLNGKYPDVAQEAHALLQSTPHDVMVVAAYGLILPRSVLDIPRYGCINIHGSLLP 120
           QPVSLRL+GKYP+VA EAHALL++TPHDVMVVAAYGLILP+S+LDIP  GCINIH SLLP
Sbjct: 61  QPVSLRLDGKYPEVAAEAHALLKATPHDVMVVAAYGLILPQSILDIPPRGCINIHASLLP 120

Query: 121 RWRGAAPIHRAIEAGDAETGITIMQMEEGLDTGPMMLIESLPIQEDDTTGSLHDKLAALG 180
           RWRGAAPIHRAIE+GDAETG+TIMQME GLDTGPM+ ++ LPI  DDTT SLHDKLA LG
Sbjct: 121 RWRGAAPIHRAIESGDAETGVTIMQMELGLDTGPMLAMQRLPITADDTTASLHDKLATLG 180

Query: 181 GKMIVEALDKLERGELPATPQPEQGANYAAKIAKEEAALDFSQSAEQLARRIRAFNPFPG 240
           G+MIV+ L ++E+G+LPA PQP+ GANYAAKI KEEA LDF+Q AEQLAR+IRAFNPFPG
Sbjct: 181 GEMIVQTLRRMEQGDLPAEPQPD-GANYAAKILKEEATLDFTQPAEQLARKIRAFNPFPG 239

Query: 241 ATGRFGDTVVKLWQARPVKVAQQGEPGQVLSADAQAGIVVACGEGALLLTELQKPGGKRL 300
           A      T++K W A+ V  + Q  PGQV++A+   G++VACG+GAL +TELQKPGGKRL
Sbjct: 240 AAATCDGTLIKFWHAQAVPASNQLPPGQVIAANPHDGVLVACGDGALRVTELQKPGGKRL 299

Query: 301 PAAQFLTGFPMEGGRL 316
            A +FL GF +E  R 
Sbjct: 300 SAVEFLKGFTLEDKRF 315


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.135    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 792,185
Number of extensions: 34306
Number of successful extensions: 88
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 234
Effective length of database: 914,170
Effective search space: 213915780
Effective search space used: 213915780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)