BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4208.p (1247 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980007|ref|YP_001351839.1| B12-dependent methionine syntha... 2252 0.0 >gi|152980007|ref|YP_001351839.1| B12-dependent methionine synthase [Janthinobacterium sp. Marseille] Length = 1252 Score = 2252 bits (5835), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1076/1251 (86%), Positives = 1162/1251 (92%), Gaps = 4/1251 (0%) Query: 1 MKPNELCQTELLLRDLMSQRILILDGAMGTMIQRYKLTEEDYRGQRFADFSVPGKELFVK 60 MK + LC TE+LLRDLM++RILILDGAMGTMIQ+YKLTEEDYRG RFADF+VPGKE+FVK Sbjct: 1 MKRDALCPTEVLLRDLMARRILILDGAMGTMIQQYKLTEEDYRGTRFADFAVPGKEIFVK 60 Query: 61 GNNELLSLTQPHIIQEIHEQYLAAGADLIETNTFGATSVAQDDYHMAHLVYEMNLESARL 120 GNNELLSLT+P +I +IHEQYLAAGADLIE+NTFGAT+VAQDDYHM HL YEMN+ SARL Sbjct: 61 GNNELLSLTRPDVISQIHEQYLAAGADLIESNTFGATTVAQDDYHMGHLAYEMNVASARL 120 Query: 121 ARAACDKYATPDKPRFVAGALGPTPKTASISPDVNDPAARNVTFDQLVTAYLEQTRALVE 180 ARAACDKY+TPDKPRFVAGALGPTPKTASISPDVNDPAARNVTFDQLV AYL+QTR LVE Sbjct: 121 ARAACDKYSTPDKPRFVAGALGPTPKTASISPDVNDPAARNVTFDQLVAAYLDQTRGLVE 180 Query: 181 GGADVLLVETIFDTLNCKAALFAIDTFFEESGKRLPIMISGTVTDASGRILSGQTVTAFW 240 GGADVLLVETIFDTLNCKAALFAID FFEESGKR PIMISGTVTDASGRILSGQTV AFW Sbjct: 181 GGADVLLVETIFDTLNCKAALFAIDQFFEESGKRFPIMISGTVTDASGRILSGQTVPAFW 240 Query: 241 NSIRHARPLTVGLNCALGAALMRPYAEELSKIADTYVCIYPNAGLPNPMSDTGFDETPDV 300 +SIRHARPLTVGLNCALGAALMRPYAEELSKIADTYVCIYPNAGLPNPMSDTGFDETPDV Sbjct: 241 HSIRHARPLTVGLNCALGAALMRPYAEELSKIADTYVCIYPNAGLPNPMSDTGFDETPDV 300 Query: 301 TSALLKEFAESGFVNVAGGCCGTTPPHIKAIAETVAKIAPRKVPEPTHEMRLSGLEPFTI 360 TS+LLK+FAESGFVNVAGGCCGTTP HIKAIAETV IAPR +P ++LSGLEPF I Sbjct: 301 TSSLLKDFAESGFVNVAGGCCGTTPDHIKAIAETVKTIAPRVIPTVEPTLKLSGLEPFII 360 Query: 361 NDDSLYVNVGERTNVTGSKAFARLILNEQYDEALAVARQQVENGAQIIDINMDEAMLDSV 420 +D SL+VNVGERTNVTGSKAFARLI+NEQYDEALAVARQQVENGAQIIDINMDEAMLDS Sbjct: 361 DDQSLFVNVGERTNVTGSKAFARLIINEQYDEALAVARQQVENGAQIIDINMDEAMLDSQ 420 Query: 421 AAMTRFLNLIASEPDIARVPIMIDSSKWEVIEAGLKCVQGKSIVNSISMKEGEEKFLREA 480 AAM+RFLNL+ASEPDIARVPIMIDSSKW VIEAGLKCVQGK+IVNSISMKEGEEKFL EA Sbjct: 421 AAMSRFLNLVASEPDIARVPIMIDSSKWSVIEAGLKCVQGKAIVNSISMKEGEEKFLHEA 480 Query: 481 KLCRRYGAAVIVMAFDEVGQADTFARKIEICERAYRLLVDKLDFPPEDIIFDPNIFAVAT 540 KLCRRYGAAVIVMAFDE GQADTF RKIEICERAY LLV+++ FPPEDIIFDPNIFA+AT Sbjct: 481 KLCRRYGAAVIVMAFDEKGQADTFERKIEICERAYWLLVNEVAFPPEDIIFDPNIFAIAT 540 Query: 541 GIEEHNNYAVDFIEATRWIHQNLPYAKISGGVSNVSFSFRGNDPAREAIHTVFLYHAIKA 600 GIEEHNNYAVDFI + RWI +NLP+AKISGGVSNVSFSFRGNDPAREAIHTVFLYHAIKA Sbjct: 541 GIEEHNNYAVDFINSVRWIKENLPHAKISGGVSNVSFSFRGNDPAREAIHTVFLYHAIKA 600 Query: 601 GMTMGIVNAGMIGVYDDLPAELRERVEDVVLNRREDATERMIEYAATLKAGDKKEEATLE 660 GMTMGIVNAGM+GVYD+LP ELRERVEDVVLNRREDATERMIE A+TLKAGDKKEEATLE Sbjct: 601 GMTMGIVNAGMVGVYDNLPEELRERVEDVVLNRREDATERMIEIASTLKAGDKKEEATLE 660 Query: 661 WRNLPVAKRLSHALVHGITQWIVEDTEEVRQQIAADGGRPIHVIEGPLMDGMNVVGDLFG 720 WR+ V +RL+HALV GITQWIVEDTEE RQ++ +GGRPIHVIEGPLMDGMN+VGDLFG Sbjct: 661 WRSGTVQQRLAHALVQGITQWIVEDTEEARQELLGNGGRPIHVIEGPLMDGMNIVGDLFG 720 Query: 721 QGKMFLPQVVKSARVMKQAVAHLIPFIEEEKRQLEIATGEVVKPKGKIVIATVKGDVHDI 780 QGKMFLPQVVKSARVMKQAVAHLIPFIEEEKR L+ TG V KPKGKIVIATVKGDVHDI Sbjct: 721 QGKMFLPQVVKSARVMKQAVAHLIPFIEEEKRLLQEQTGIVSKPKGKIVIATVKGDVHDI 780 Query: 781 GKNIVTVVLQCNNFEVVNMGVMVPCAEILAKAKEEKADIIGLSGLITPSLEEMAYVAKEM 840 GKNIV+VVLQCNNFEVVNMGVMVPC+EILAKAKEE ADIIGLSGLITPSLEEMAYVAKEM Sbjct: 781 GKNIVSVVLQCNNFEVVNMGVMVPCSEILAKAKEENADIIGLSGLITPSLEEMAYVAKEM 840 Query: 841 QRDPYFAGLKMPLMIGGATTSRAHTAVKIAPNYEGPVVYVPDASRAVSVAQSLLADEQKT 900 QRD YF GLK PL+IGGATTSRAHTAVKIA NY+GPVVYVPDASR+VSVAQSLL EQ+ Sbjct: 841 QRDEYFRGLKTPLLIGGATTSRAHTAVKIAHNYDGPVVYVPDASRSVSVAQSLLTPEQRD 900 Query: 901 QYVAELNADYDRIREQHASKKAAPMLSLAAARANKTKLEF----APVKPKFIGRRLFKNV 956 Y+AE+ ADY+RIREQHA+KKA PML+LA ARANK KLEF APVKPKFIGRR+FKNV Sbjct: 901 AYIAEIAADYERIREQHANKKAVPMLTLAEARANKMKLEFTGKYAPVKPKFIGRRVFKNV 960 Query: 957 DLGLLANYIDWGPFFQTWDLAGPYPAILTDEVVGEAATKVYQEAQAMLKKIIDGRWLTAN 1016 DL +A YIDWGPFFQTWDLAGPYPAIL DEVVGEAATKV+ E QA+LKK+I+GRWL AN Sbjct: 961 DLATIAQYIDWGPFFQTWDLAGPYPAILKDEVVGEAATKVFAEGQALLKKVIEGRWLQAN 1020 Query: 1017 GVISLLPANTVNEDDIEIYTDDSRSQVAFTYYGLRQQTEKPVVDGVARPNQCLSDFIAPK 1076 GVI+LLPANTVN+DDIEIYTD++RS+VAFTYYG+RQQT KPV+DGVARPNQCL+DFIAPK Sbjct: 1021 GVIALLPANTVNDDDIEIYTDETRSKVAFTYYGVRQQTVKPVIDGVARPNQCLTDFIAPK 1080 Query: 1077 DSGVPDYIGMFAVTAGLGIEKYEKRFEDAHDDYSSIMLKALADRLAEAFAEYLHERVRKD 1136 SGV DYIG+FAVTAGLGIEKYEKRFEDAHDDYSSIMLK+LADRLAEAFAE+LHERVRKD Sbjct: 1081 SSGVADYIGLFAVTAGLGIEKYEKRFEDAHDDYSSIMLKSLADRLAEAFAEHLHERVRKD 1140 Query: 1137 LWGYAADENLDSAELIKEKYLGIRPAPGYPACPEHTVKADAFRVMQCDEIGMQLTESYAM 1196 LWGYAADE L + LIKE+Y GIRPAPGYPACPEHTVK + F+ +Q +EIGM LT+SYAM Sbjct: 1141 LWGYAADEKLTNEALIKEEYSGIRPAPGYPACPEHTVKKEMFQTLQAEEIGMMLTDSYAM 1200 Query: 1197 FPGASVSGFYFAHPQSKYFVVGKIGEDQVIDMAQRRHVPKEDVERWLAPNL 1247 FPGA+VSGFYFAHP++KYFVVGKIG+DQV+DMA+RR KEDVERWLAPNL Sbjct: 1201 FPGAAVSGFYFAHPEAKYFVVGKIGDDQVVDMAERRGATKEDVERWLAPNL 1251 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.135 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 2,876,181 Number of extensions: 121000 Number of successful extensions: 352 Number of sequences better than 1.0e-08: 1 Number of HSP's gapped: 349 Number of HSP's successfully gapped: 1 Length of query: 1247 Length of database: 1,221,021 Length adjustment: 94 Effective length of query: 1153 Effective length of database: 873,503 Effective search space: 1007148959 Effective search space used: 1007148959 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 135 (56.6 bits)