BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4202.p
         (229 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981869|ref|YP_001353588.1| multiple antibiotic resistance ...   322   1e-89

>gi|152981869|ref|YP_001353588.1| multiple antibiotic resistance
           protein MarC [Janthinobacterium sp. Marseille]
          Length = 226

 Score =  322 bits (825), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 156/225 (69%), Positives = 194/225 (86%), Gaps = 1/225 (0%)

Query: 1   MLILFLKAVLLIPVTLLPILNPLGIAPVFANLLGNVSRSTEKRIARQVAINCWFMLVAAI 60
           MLILF KA +L+P+T+LPI+NP G APVFA+LLGNVSR  EK++ARQVA+NC+F+L+ A+
Sbjct: 1   MLILFFKAAILVPITMLPIINPFGNAPVFASLLGNVSRDVEKKLARQVALNCFFLLLGAM 60

Query: 61  FIGSHVLTFFGISLPIVRVGGGLLVAVSGWKMLNDNSQDSSIPTQVAKSYDDDLPDDEIK 120
           FIGSHVL FFGIS+PIVR+ GGLLVA + W++LNDN QD+ I TQVA +  +   D+E K
Sbjct: 61  FIGSHVLMFFGISIPIVRISGGLLVAFTAWRLLNDNGQDA-IRTQVATAPMEAWSDEEFK 119

Query: 121 ARSFYPMSFPLTVGPGTIAASITLGANTPTRLLDWVISVGSAALGAALTALVIFLCYNYA 180
            RSFYP+SFPLTVGPG IAASITLGA+TP RLLD VIS+GSAA+GAA+TA VI+LCYN A
Sbjct: 120 VRSFYPISFPLTVGPGAIAASITLGASTPARLLDQVISLGSAAVGAAMTAFVIWLCYNSA 179

Query: 181 HKLVNLMGRLGTMVVLRLSAFILLCIGIQIFWSGMAALLAEAGIS 225
           +K+V ++GRLGTMV+LRLSAFILLCIG++IFW+G+  LL EAGI+
Sbjct: 180 NKMVKMLGRLGTMVMLRLSAFILLCIGVEIFWTGVVGLLVEAGIA 224


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.327    0.141    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 442,068
Number of extensions: 16322
Number of successful extensions: 75
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 1,221,021
Length adjustment: 80
Effective length of query: 149
Effective length of database: 925,261
Effective search space: 137863889
Effective search space used: 137863889
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 128 (53.9 bits)