BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4201.p
         (217 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981631|ref|YP_001354811.1| hypothetical protein mma_3121 [...   133   1e-32

>gi|152981631|ref|YP_001354811.1| hypothetical protein mma_3121
           [Janthinobacterium sp. Marseille]
          Length = 208

 Score =  133 bits (334), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 72/206 (34%), Positives = 112/206 (54%), Gaps = 7/206 (3%)

Query: 11  PISALTIPLFPLASTLFPQGRLPLQIFEVRYLDMIRKCIAEGSSFGVVALTDGSEVRRPG 70
           P +   +PLFPL + LFP G LPL++FE RY+DM+R C+     FGVV +  G E+    
Sbjct: 2   PENEYWLPLFPLNTVLFPGGILPLKVFETRYIDMVRDCMKREMPFGVVLIKSGQEIGNAA 61

Query: 71  QTERFVGVGTVARIQEWSTPSPGLMRIACLGGERFRILQAEQQKHGLWTAQVEMMEDDHA 130
           + E    VG +A I +W  P  G++ +   GG RFRIL+    K     A+V+++     
Sbjct: 62  EPE---DVGCMAHITDWDAPQLGVLLLRTEGGTRFRILETRVHKDQHLEARVQILGHGGP 118

Query: 131 VSIPEELRNTAQALENLLQSVLRQGLP----DSEVPIAAPYRLDDCGWVANRWAEMMPIR 186
             + +E  + A  L+ ++  +  +G      + E P      LDD GWVANRW E++PI 
Sbjct: 119 SLLMKEQESCANTLKLVIHDINVKGHAEIGDEFESPFTETLHLDDAGWVANRWCEILPIP 178

Query: 187 VELKQSLLALDNPLLRLELVQDALDE 212
           ++ +Q LL +D+   RL ++Q  L +
Sbjct: 179 LKARQKLLEVDDAQTRLTIIQQYLQQ 204


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.137    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 534,784
Number of extensions: 20872
Number of successful extensions: 56
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 1
Length of query: 217
Length of database: 1,221,021
Length adjustment: 80
Effective length of query: 137
Effective length of database: 925,261
Effective search space: 126760757
Effective search space used: 126760757
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)