BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4193.p
         (566 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980131|ref|YP_001355384.1| preprotein translocase YidC sub...   753   0.0  

>gi|152980131|ref|YP_001355384.1| preprotein translocase YidC
           subunit [Janthinobacterium sp. Marseille]
          Length = 564

 Score =  753 bits (1944), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/564 (64%), Positives = 444/564 (78%), Gaps = 8/564 (1%)

Query: 1   MDIKRTVLWVVFSFSLLLLWDSWMRHNGHQSMFF--PSATSTQEQAAANPASPTASPTGS 58
           MDIKRTVLWVVFSFSLL+LWD++ R+ G  S+FF  P+  + +  AA +     A+PT  
Sbjct: 1   MDIKRTVLWVVFSFSLLMLWDNYNRYTGKPSIFFDNPTTQAAKPAAATDDGKTAAAPTAD 60

Query: 59  PVPQAGTPAPAPGAVPGAEVAAATKGETITITTDLVKASIDTVGGELKRLELLKEPDVVD 118
            VP +   A     VP +   A TK E +TITTDL+KA IDTVGGE++ LELL   +  D
Sbjct: 61  -VPTSSAHAANATGVPDS--VAPTKSEIVTITTDLIKADIDTVGGEIRHLELLTHHESSD 117

Query: 119 PTKNVVLFDSEPGHMYLAESGLIGGPFPNHKTIFTAQPGPRTLDNGNEVQLVLVAEQGGV 178
            TK++VLFDS P   YL ++GLIGG +PNHK++FT +PGPR+L+ G++VQLVL AEQ GV
Sbjct: 118 STKDIVLFDSTPPRTYLGQTGLIGGAYPNHKSLFTVRPGPRSLEAGDQVQLVLEAEQNGV 177

Query: 179 KLTKTYTFKRDSYLIDVKHTVTNTTGAPINPSLYLQLVRDGNKPGGESHFYSTFTGPAVY 238
           KL KTYTFKR  Y ID+KH V N T A INPSLYLQLVRDG+K   ES FYSTFTGPAVY
Sbjct: 178 KLVKTYTFKRGEYKIDIKHDVINKTAAAINPSLYLQLVRDGSKLNNESMFYSTFTGPAVY 237

Query: 239 SDAEHFEKLDFEKIANGKQQHVNKADNGWIAMVQHYFVSAFIPPQKAERDIFSKKVGDNL 298
           SD++ F+K+ FE I  GK +HV KA++GWIAMVQHYFVSAF+PP    R+ F+KK+  NL
Sbjct: 238 SDSDKFQKVTFESIEKGKIEHVVKAESGWIAMVQHYFVSAFVPPANVPREYFTKKLATNL 297

Query: 299 YAIGSILPLGTVAPNASVTMDSQLYSGPTVSKTLQAIAPGLDLVRDYGHLTVIAEPIFWL 358
           YA+G+I+P+G VAP A+ +MD+ LYSGP  SK L+A+APG +LV+DYG LT+IA+PIFWL
Sbjct: 298 YAVGAIMPMGAVAPGATQSMDATLYSGPQESKRLEAVAPGFELVKDYGWLTIIAKPIFWL 357

Query: 359 MTHIHNLVGNWGWTIILLTVLIKLVFFPLSAASYRSMAKMKAVSPKMQAIRERHKNDPQA 418
           M  IH L+GNWGWTI++LT++IKL FFPLSAASYRSMAKMK V+PKM  IR ++K +PQ 
Sbjct: 358 MIQIHQLLGNWGWTIVVLTIVIKLAFFPLSAASYRSMAKMKLVTPKMTEIRTKYKGEPQK 417

Query: 419 MNREMMALYKTEKINPLGGCLPIVIQIPVFISLYSVLLASVEMRGAPWLGWVHDLTAPDR 478
           MN  MM LYK EKINPLGGC+PIVIQIPVFISLY VLLASVEMR APWL W+ DL +PD 
Sbjct: 418 MNAAMMELYKKEKINPLGGCMPIVIQIPVFISLYWVLLASVEMRNAPWL-WISDLASPDT 476

Query: 479 LFGT--LPYFNMPIGLLPIIMAASMFLQTKLNPTPPDPVQAKVMMFMPLVFSVMFFFFPS 536
           LFG+  +  F++ IG+LPI+MA SMF+QTKLNPTPPDP+QAKVMMFMP+ FS+MFFFFP+
Sbjct: 477 LFGSYMIGSFHLTIGILPILMAISMFIQTKLNPTPPDPIQAKVMMFMPIAFSLMFFFFPA 536

Query: 537 GLVLYWVTNNILSIAQQWVITRNI 560
           GLVLYWV NNILSIAQQW I++ +
Sbjct: 537 GLVLYWVVNNILSIAQQWTISKKM 560


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.135    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,190,039
Number of extensions: 47971
Number of successful extensions: 127
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 1,221,021
Length adjustment: 88
Effective length of query: 478
Effective length of database: 895,685
Effective search space: 428137430
Effective search space used: 428137430
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)