BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4192.p (466 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981181|ref|YP_001355383.1| tRNA modification GTPase TrmE [... 722 0.0 gi|152981185|ref|YP_001353813.1| GTP-binding protein EngA [Janth... 67 2e-12 gi|152980964|ref|YP_001353811.1| HflX GTP-binding protein [Janth... 62 6e-11 gi|152981217|ref|YP_001353061.1| GTP-binding protein Era [Janthi... 58 1e-09 >gi|152981181|ref|YP_001355383.1| tRNA modification GTPase TrmE [Janthinobacterium sp. Marseille] Length = 465 Score = 722 bits (1863), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/468 (75%), Positives = 405/468 (86%), Gaps = 5/468 (1%) Query: 1 MTLDSSPIAAIATAPGRGGIGVVRISGRNLTPVMRAVCGRE--SLAPRHATYLPFQNEDG 58 M DSSPIAAIATAPGRGGIGVVR+SG+N++ ++ AVC + L PRHAT+ F N DG Sbjct: 1 MNFDSSPIAAIATAPGRGGIGVVRVSGKNISSIIEAVCATKGAELQPRHATFTNFVNADG 60 Query: 59 SVIDQGLAIYFPGPHSYTGEDVLELQGHGGPVVMQMLLARCVQAGSEIGLRLAEPGEFTQ 118 SVIDQGLAIYF PHSYTGEDVLELQGHGGP+V+QMLL RC++AG++IGLR+A+PGEFT Sbjct: 61 SVIDQGLAIYFKAPHSYTGEDVLELQGHGGPIVLQMLLTRCLEAGTDIGLRMAQPGEFTH 120 Query: 119 RAFLNDKIDLAQAEAVADLIEATTEAAAKSASESLSGAFSKVIHELVDQVTRLRMLVEAT 178 RAFLNDK+DLAQAE V DLIEA+TEAAAKSAS+SLSGAFSK I +LVD++T LRMLVEAT Sbjct: 121 RAFLNDKLDLAQAEGVIDLIEASTEAAAKSASQSLSGAFSKTIQDLVDKITNLRMLVEAT 180 Query: 179 LDFPEEEIDFLQQSDARGQLATIRSTLEDVFKHAAQGALLRDGLNAVLAGKPNVGKSSLL 238 LDFPEEEIDFL++SDARGQL IR L+ VF A+QGALLRDGLN VLAG+PNVGKSSLL Sbjct: 181 LDFPEEEIDFLEKSDARGQLNGIREALQAVFTQASQGALLRDGLNIVLAGQPNVGKSSLL 240 Query: 239 NVLAGSDVAIVTPIAGTTRDKVTQTIQIEGMPLNIIDTAGIREAGEDGSGPDEVERIGIE 298 N LAGSDVAIVT IAGTTRDKV +TIQIEG+P+N+IDTAGIR+A + DEVERIGIE Sbjct: 241 NALAGSDVAIVTAIAGTTRDKVIETIQIEGIPVNVIDTAGIRDASD---ATDEVERIGIE 297 Query: 299 RTWAEVAKADVILHMLDADRGPTLEDEKITARFPDGVPIIRIWNKIDRSGHKPAVDKMSD 358 RTWA V ADVI+HMLDA+RGPT DE+I RFP+ +P++RIWNKID SGH+PA+D+M D Sbjct: 298 RTWAAVKTADVIIHMLDANRGPTRADEQIVERFPENIPVMRIWNKIDLSGHRPAIDRMPD 357 Query: 359 ATHVYLSAAEGQGVDLLRAELLRIAGWQQTVESRYLARERHLLALKAADEHLAHAAAHAA 418 +TH+Y+SA + QG+DLLR ELLR+ GWQQT ES YLARERHL+ALK+A +HL AA HAA Sbjct: 358 STHIYVSATDLQGMDLLRGELLRLIGWQQTGESLYLARERHLVALKSAHDHLEMAAQHAA 417 Query: 419 LDNEAGDHALDLFAEELRLAQERLSSITGKFTSDDLLGVIFSRFCIGK 466 D+EA D ALDLFAEELRLAQERLSSITG+FTSDDLLGVIFSRFCIGK Sbjct: 418 HDSEATDPALDLFAEELRLAQERLSSITGEFTSDDLLGVIFSRFCIGK 465 >gi|152981185|ref|YP_001353813.1| GTP-binding protein EngA [Janthinobacterium sp. Marseille] Length = 447 Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 36/102 (35%), Positives = 61/102 (59%), Gaps = 3/102 (2%) Query: 226 LAGKPNVGKSSLLNVLAGSDVAIVTPIAGTTRDKVTQTIQIEGMPLNIIDTAGIREAGED 285 + G+PNVGKS+L+N L G + I + GTTRD + + +G +IDTAGIR G+ Sbjct: 185 IVGRPNVGKSTLVNTLLGEERVIAFDLPGTTRDSIEIPFERDGKHYTLIDTAGIRRRGKV 244 Query: 286 GSGPDEVERIGIERTWAEVAKADVILHMLDADRGPTLEDEKI 327 + +E+ + +T +++A+V+L +LDA + + +D I Sbjct: 245 F---EAIEKFSVVKTLQSISEANVVLLLLDAQQDISEQDAHI 283 Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 81/169 (47%), Gaps = 9/169 (5%) Query: 226 LAGKPNVGKSSLLNVLAGSDVAIVTPIAGTTRDKVTQTIQIEGMPLNIIDTAGIREAGED 285 L G+PNVGKS+L N L S A+V + G TRD+ ++ P +IDT G ++ Sbjct: 7 LIGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGERPFLVIDTGGFEPVAKE 66 Query: 286 GSGPDEVERIGIERTWAEVAKADVILHMLDADRGPTLEDEKITARF-PDGVPIIRIWNKI 344 G + ++T VA+ADV++ ++D +G T D+ IT G ++ + NK Sbjct: 67 G-----IMHEMAKQTKQAVAEADVVIFIVDGRQGLTPHDKTITDFLRKSGRSVMLVVNKA 121 Query: 345 DRSGHKPAVDKMSD---ATHVYLSAAEGQGVDLLRAELLRIAGWQQTVE 390 + + + +SAA G GV+ L E L IA Q+ E Sbjct: 122 EGMKYTTVTADFYELGMGDPYVISAAHGDGVNDLVEEALNIAFAQRPPE 170 >gi|152980964|ref|YP_001353811.1| HflX GTP-binding protein [Janthinobacterium sp. Marseille] Length = 372 Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 61/192 (31%), Positives = 91/192 (47%), Gaps = 20/192 (10%) Query: 197 QLATIRSTLEDVFKHAAQGALLRDGLNAV---LAGKPNVGKSSLLNVLAGSDVAIVTPIA 253 ++ +R+ L+ + K A R NA L G N GKS+L N LA + V + Sbjct: 162 RVKALRAKLDKLHKQHATQRRARGRNNAFSVSLVGYTNAGKSTLFNALAKTRVLAADQLF 221 Query: 254 GTTRDKVTQTIQI-EGMPLNIIDTAG-IREAGEDGSGPDEVERIGIERTWAEVAKADVIL 311 T D ++ I + E + I DT G IRE P ++ T E AD++L Sbjct: 222 ATL-DTTSRRIYLGEAGNVVISDTVGFIREL------PHQLV-AAFRATLEETIHADLLL 273 Query: 312 HMLDAD---RGPTLEDEKITARF--PDGVPIIRIWNKIDRSGHKPAV--DKMSDATHVYL 364 H++D R +E + R D +P I +WNKID +G +PA+ D+ V++ Sbjct: 274 HVVDGASPVRMEQIEQVNMVLREIGADHIPQILVWNKIDAAGLEPALERDEYDKIRRVFI 333 Query: 365 SAAEGQGVDLLR 376 SA G G+DLLR Sbjct: 334 SAQTGSGLDLLR 345 >gi|152981217|ref|YP_001353061.1| GTP-binding protein Era [Janthinobacterium sp. Marseille] Length = 300 Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/134 (32%), Positives = 67/134 (50%), Gaps = 9/134 (6%) Query: 218 LRDGLNAVLAGKPNVGKSSLLNVLAGSDVAIVTPIAGTTRDKVTQTIQIEGMPLNIIDTA 277 R G A++ G+PNVGKS+L+N L G+ V+I + A TTR ++T +E +DT Sbjct: 10 FRCGYIAIV-GRPNVGKSTLMNELIGAKVSITSRKAQTTRHRITGIQTVEDAQFVYVDTP 68 Query: 278 GIREAGEDGSGPDEVERIGIERTWAE-VAKADVILHMLDADRGPTLEDEKITARFPDGVP 336 G + + + RT + ADVIL++++A D+++ P VP Sbjct: 69 GFQTRHSNALNKT------LNRTVTNTLTAADVILYVIEAGTFGQ-ADQQVLDLIPKNVP 121 Query: 337 IIRIWNKIDRSGHK 350 I + NK DR K Sbjct: 122 CILVINKSDRVKDK 135 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.317 0.134 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 978,688 Number of extensions: 40394 Number of successful extensions: 171 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 167 Number of HSP's successfully gapped: 5 Length of query: 466 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 379 Effective length of database: 899,382 Effective search space: 340865778 Effective search space used: 340865778 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)