BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4188.p (701 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980195|ref|YP_001355104.1| EF-G elongation factor [Janthin... 1112 0.0 gi|152979791|ref|YP_001352764.1| peptide chain release factor 3 ... 174 2e-44 gi|152981046|ref|YP_001353057.1| GTP-binding protein LepA [Janth... 99 1e-21 gi|152980795|ref|YP_001354182.1| GTP-binding elongation factor [... 96 1e-20 gi|152981083|ref|YP_001355117.1| elongation factor Tu [Janthinob... 60 5e-10 >gi|152980195|ref|YP_001355104.1| EF-G elongation factor [Janthinobacterium sp. Marseille] Length = 702 Score = 1112 bits (2875), Expect = 0.0, Method: Compositional matrix adjust. Identities = 532/700 (76%), Positives = 612/700 (87%), Gaps = 1/700 (0%) Query: 1 MSRKTRIENYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHNGAATMDWMEQEQERG 60 M+RKT IE YRNIGISAHIDAGKTTTTER+LFYTGVNHK+GEVH+GAATMDWMEQEQERG Sbjct: 1 MARKTPIERYRNIGISAHIDAGKTTTTERVLFYTGVNHKLGEVHDGAATMDWMEQEQERG 60 Query: 61 ITITSAATTAFWKGMAGNYPEHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYDSVGGVQ 120 ITITSAATT FWKGMAGN+P H INIIDTPGHVDFTIEVERSMRVLDGA MVY +VGGVQ Sbjct: 61 ITITSAATTCFWKGMAGNFPAHHINIIDTPGHVDFTIEVERSMRVLDGACMVYCAVGGVQ 120 Query: 121 PQSETVWRQANKYKVPRIAFVNKMDRVGADFFRVQKQIEERLKGRAVPIQIPVGAEDHFS 180 PQSETVWRQANKYKVPR+AFVNKMDR GA+FF+V Q+ RLK VP+Q+P+GAED F Sbjct: 121 PQSETVWRQANKYKVPRLAFVNKMDRTGANFFKVYDQMRARLKANPVPMQVPIGAEDSFE 180 Query: 181 GVIDLVKMKAIIWDEASQGVLFKYEDIPLELEDTARQWRDHMVEQAAEANEELLEKYLSG 240 GVIDLVKMKAIIWD+ASQG+ F+Y DIP L A++WR++MVE AAEA+EEL+ KYL Sbjct: 181 GVIDLVKMKAIIWDDASQGMKFEYGDIPEHLLADAKKWRENMVEAAAEASEELMNKYLEE 240 Query: 241 NPLTEDDIKRGLRLRTVANEIVPMLAGSAFKNKGVQAMLDAVIDYLPSPVDVPAIAGHGE 300 L+E DIK +R RT+A+EIVPM+ G+AFKNKGVQAMLD V++YLPSPVD+P + G E Sbjct: 241 GDLSEADIKAAIRQRTIASEIVPMMCGTAFKNKGVQAMLDGVVEYLPSPVDIPPVPGLNE 300 Query: 301 DDSEIERHPSDEEPFSALAFKIMTDPFVGQLTFFRVYSGLVNSGDTVYNPVKGKKERLGR 360 DD + R D E FSALAFKI TDPFVGQL F R YSG +NSGDTV+N VK KKER+GR Sbjct: 301 DDEPVVRKAEDTEKFSALAFKIATDPFVGQLCFIRCYSGTLNSGDTVFNSVKEKKERIGR 360 Query: 361 ILQMHANERKEIKEVFAGDIAAAVGLKDVTTGDTLSDPEHPIILERMIFPEPVISQAVEP 420 I+QMHAN+R+EIKE+ AGDIAA VGLKD TTGDTL D + ++LERMIFPEPVISQAVEP Sbjct: 361 IVQMHANQREEIKEMLAGDIAAIVGLKDTTTGDTLCDDKAIVVLERMIFPEPVISQAVEP 420 Query: 421 KTKADQEKMGIALNRLAQEDPSFRVHTDEESGQTIMSGMGELHLEILVDRMKREFNVEAT 480 KTKADQEKMG+ALNRLA EDPSFRV TDEESGQTI++GMGELHL+I+VDRMKREF VEAT Sbjct: 421 KTKADQEKMGLALNRLAAEDPSFRVRTDEESGQTIIAGMGELHLDIIVDRMKREFGVEAT 480 Query: 481 VGKPQVAYREAIRKAVEDVEGKFVKQSGGRGQYGHVVIKLEPQPAGKGYEFVDAIKGGVV 540 VGKPQVAYRE IRK E++EGKFVKQSGGRGQYGHVV+K+EPQ GKG+EF+DAIKGG V Sbjct: 481 VGKPQVAYRETIRKVCEEIEGKFVKQSGGRGQYGHVVLKIEPQEPGKGFEFIDAIKGGTV 540 Query: 541 PREFIPAVDKGIQESLKAGVLAGYPVVDVKATLTFGSYHDVDSNENAFRMAGSMAFKEAM 600 PRE+IPAV+KG++E+L +GVLAGYPVVDVK TL FGSYHDVDSNENAFRMA SMAFK+ Sbjct: 541 PREYIPAVEKGVRETLTSGVLAGYPVVDVKVTLFFGSYHDVDSNENAFRMAASMAFKDGC 600 Query: 601 KRAGPMLLEPMMQVEVETPEEFMGNVMGDLSSRRGMVQGMEDMV-GGGKLVRAEVPLSEM 659 ++A P++LEPMM VEVETPE++ G VMGDLSSRRGMVQGM+++ GGGK+++AEVPLSEM Sbjct: 601 RKASPVILEPMMAVEVETPEDYAGTVMGDLSSRRGMVQGMDEIAGGGGKIIKAEVPLSEM 660 Query: 660 FGYSTTLRSLSQGRATYSMEFKHYAEAPRQVVEQLSGSKA 699 FGYST+LRS +QGRATYSMEFKHY+EAP+ V++ + SKA Sbjct: 661 FGYSTSLRSATQGRATYSMEFKHYSEAPKNVIDAIVTSKA 700 >gi|152979791|ref|YP_001352764.1| peptide chain release factor 3 [Janthinobacterium sp. Marseille] Length = 556 Score = 174 bits (440), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 139/519 (26%), Positives = 242/519 (46%), Gaps = 48/519 (9%) Query: 4 KTRIENYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHNGA----ATMDWMEQEQER 59 + + R GI +H DAGKTT TE++L ++G G V AT DWM+ E++R Sbjct: 29 NSEVARRRTFGIISHPDAGKTTLTEKLLLFSGAIQLAGTVKGRKSGRHATSDWMDIEKQR 88 Query: 60 GITITSAATTAFWKGMAGNYPEHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYDSVGGV 119 GI++ S+ M Y +H +N++DTPGH DF+ + R + +D A+MV D+ GV Sbjct: 89 GISVASSV-------MQFEYRDHVVNLLDTPGHQDFSEDTYRVLTAVDSALMVIDAAKGV 141 Query: 120 QPQSETVWRQANKYKVPRIAFVNKMDRVGADFFRVQKQIEERLKGRAVPIQIPVGAEDHF 179 + Q+ + P I F+NK+DR D + ++E LK P+ P+G +F Sbjct: 142 EEQTIKLLNVCRMRNTPIITFMNKLDRETRDPLELLDELESVLKIECAPVTWPIGMGKNF 201 Query: 180 SGVIDLVKMKAIIWDEASQGVLFKYEDIPLELEDTARQWRDHMVEQAAEANEEL-LEKYL 238 GV L++ + +++ ++ +E I + D R + E + E+L +E L Sbjct: 202 RGVYHLLRDEIMLFAAGNEKADQTFEVI--KGIDNPR-----LAEMFPQEIEQLKMEVEL 254 Query: 239 ---SGNPLTEDDIKRGLRLRTVANEIVPMLAGSAFKNKGVQAMLDAVIDYLPSPVDVPAI 295 + +P D G R P+ GSA N GV+ +L+A++D+ P Sbjct: 255 VHGASHPFELDAFLNGTR--------TPVFFGSAINNFGVREILNALLDWAQPP------ 300 Query: 296 AGHGEDDSEIERHPSDEEPFSALAFKIMT--DP-FVGQLTFFRVYSGLVNSGDTVYNPVK 352 E D+ + E PFS FKI DP ++ F RV SG G + + Sbjct: 301 ---RERDATVRSVKPTELPFSGFVFKIQANMDPAHRDRIAFLRVCSGRFERGMKIKHLRL 357 Query: 353 GKKERLGRILQMHANERKEIKEVFAGDIAAAVGLKDVTTGDTLSDPEHPIILERMIFP-- 410 ++ ++ ++ A+ R++++E +AGDI ++ GD+ S+ E +L+ P Sbjct: 358 NREIKVSSVVTFMASSREQVEEAYAGDIIGLPNHGNMQIGDSFSEGE---LLQFTGIPYF 414 Query: 411 EPVISQAVEPKTKADQEKMGIALNRLAQEDPSFRVHTDEESGQTIMSGMGELHLEILVDR 470 P ++V + +++ L +L +E + +V S I+ G+G L E++ R Sbjct: 415 APDFFRSVRIRNPLKIKQLHKGLQQLGEEG-AIQVFKPVNSSDLILGGVGVLQFEVVASR 473 Query: 471 MKREFNVEATVGKPQVAYREAIRKAVEDVEGKFVKQSGG 509 + E+ V+A ++ I + + +F K S G Sbjct: 474 LLNEYGVDAVFEGTSISSARWITCDDKKMLAEFEKSSAG 512 >gi|152981046|ref|YP_001353057.1| GTP-binding protein LepA [Janthinobacterium sp. Marseille] Length = 597 Score = 99.0 bits (245), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 57/154 (37%), Positives = 83/154 (53%), Gaps = 5/154 (3%) Query: 7 IENYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHNGAATMDWMEQEQERGITITSA 66 + N RN I AHID GK+T +RI+ G + + A +D M+ E+ERGITI + Sbjct: 1 MNNIRNFSIIAHIDHGKSTLADRIIQLCG---GLSDREMEAQVLDSMDIERERGITIKAQ 57 Query: 67 ATTAFWKGMAGNYPEHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYDSVGGVQPQSETV 126 +K G + +N+IDTPGHVDF+ EV RS+ +GA++V D+ GV+ Q+ Sbjct: 58 TAALMYKARDGQV--YNLNLIDTPGHVDFSYEVSRSLSACEGALLVVDASQGVEAQTVAN 115 Query: 127 WRQANKYKVPRIAFVNKMDRVGADFFRVQKQIEE 160 A V + +NK+D AD +IEE Sbjct: 116 CYTALDLGVEVVPVLNKIDLPSADPANAIAEIEE 149 >gi|152980795|ref|YP_001354182.1| GTP-binding elongation factor [Janthinobacterium sp. Marseille] Length = 612 Score = 95.5 bits (236), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 57/140 (40%), Positives = 79/140 (56%), Gaps = 9/140 (6%) Query: 11 RNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHNGAATMDWMEQEQERGITITSAATTA 70 RNI I AH+D GKTT +++L +G + +V A MD + E+ERGITI S Sbjct: 9 RNIAIIAHVDHGKTTLVDQLLRQSGTFRENQQVD--ARVMDSNDIEKERGITILSKNCAV 66 Query: 71 FWKGMAGNYPEHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYDSVGGVQPQSETVWRQA 130 +KG INI+DTPGH DF EVER + ++D +++ D+ G PQ+ V R+A Sbjct: 67 EYKGT-------HINIVDTPGHADFGGEVERVLSMVDSVLLLVDAQEGPMPQTRFVTRKA 119 Query: 131 NKYKVPRIAFVNKMDRVGAD 150 + I VNK+DR AD Sbjct: 120 LALGLKPIVVVNKIDRENAD 139 Score = 59.3 bits (142), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 61/251 (24%), Positives = 112/251 (44%), Gaps = 43/251 (17%) Query: 263 PMLAGSAFK----------NKGVQAMLDAVIDYLPSPVDVPAIAGHGEDDSEIERHPSDE 312 P++ S FK + ++ + DA+++++P+ D P + Sbjct: 164 PIVYASGFKGYAGLEDTVRDGNMEPLFDAILEHVPAREDDP------------------D 205 Query: 313 EPFSALAFKIMTDPFVGQLTFFRVYSGLVNS-GDTVY--NPV-KGKKERLGRILQMHANE 368 P + +VG++ R+ +G V + D V+ P K K R+ ++L + Sbjct: 206 APLQLQITSLEYSSYVGKIGVGRILAGRVKALQDVVWMNGPEDKPTKARINQVLTFKGLD 265 Query: 369 RKEIKEVFAGDIAAAVGLKDVTTGDTLSDPEHPIILERMIFPEPVISQ--AVEPKTKADQ 426 R + E AGDI G+++++ G T+ + P L + EP ++ V A + Sbjct: 266 RVLVDEALAGDIVLINGIEEISIGSTICAVDAPNGLPMLKVDEPTLTMNFMVNSSPLAGR 325 Query: 427 EKMGIAL----NRLAQE---DPSFRVHTDEESGQTI-MSGMGELHLEILVDRMKREFNVE 478 E + +RL +E + + RV E+ T +SG GELHL IL++ M+RE E Sbjct: 326 EGKFVTTRQIRDRLEKELKANMALRVVQSEDDDSTYEVSGRGELHLTILIENMRRE-GFE 384 Query: 479 ATVGKPQVAYR 489 V +P+V ++ Sbjct: 385 MAVSRPRVVFK 395 >gi|152981083|ref|YP_001355117.1| elongation factor Tu [Janthinobacterium sp. Marseille] Length = 396 Score = 60.1 bits (144), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 69/143 (48%), Gaps = 10/143 (6%) Query: 6 RIENYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHNGAATMDWMEQEQERGITITS 65 R + + N+G H+D GKTT T I T ++ K G G +D +E+ RGITI + Sbjct: 8 RTKPHVNVGTIGHVDHGKTTLTAAIA--TVLSKKFGGEAKGYDQIDNAPEEKARGITINT 65 Query: 66 AATTAFWKGMAGNYPEHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYDSVGGVQPQSET 125 + ++ + +Y +D PGH D+ + +DGA++V + G PQ+ Sbjct: 66 SHVE--YETESRHYAH-----VDCPGHADYVKNMITGAAQMDGAILVCSAADGPMPQTRE 118 Query: 126 VWRQANKYKVPR-IAFVNKMDRV 147 + + VP I F+NK D V Sbjct: 119 HILLSRQVGVPYIIVFLNKADMV 141 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.316 0.134 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,638,899 Number of extensions: 70813 Number of successful extensions: 218 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 205 Number of HSP's successfully gapped: 7 Length of query: 701 Length of database: 1,221,021 Length adjustment: 90 Effective length of query: 611 Effective length of database: 888,291 Effective search space: 542745801 Effective search space used: 542745801 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)