BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4187.p
         (213 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979947|ref|YP_001353253.1| TetR family transcriptional reg...   132   1e-32
gi|152982103|ref|YP_001352448.1| TetR family transcriptional reg...    63   1e-11

>gi|152979947|ref|YP_001353253.1| TetR family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 211

 Score =  132 bits (333), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 75/182 (41%), Positives = 104/182 (57%), Gaps = 6/182 (3%)

Query: 3   KTRGRPRSFDREQALHQAMQVFWSKGYEGTTMADLTAAIGVKAPSLYAAFGDKDALFREV 62
           K  GRP SFDRE AL +AM VFW  GYE  ++++LT+A+G+  PSLYAAFGDK+ LF E 
Sbjct: 13  KKGGRPLSFDREAALERAMLVFWRYGYEAASLSELTSAMGITPPSLYAAFGDKEQLFLEA 72

Query: 63  VEVYARTVSAEPLRLLQAGKGIYQDLLAMLRASVRMYSGKTTLPGLPVGKGCMVVVSAIN 122
           VE Y+ T S + L+ L A     +D +  L  S  +     T P  P   GC+VV +A N
Sbjct: 73  VERYS-TKSCDALQCLFAEAPTARDAIERLLQSSAV---DNTCPSHP--PGCLVVTAATN 126

Query: 123 CAPENSEHSDALSQRRHKRRNEIRARLLQAQREGEIRADADVTALGDFYTSFLNGLALGA 182
           C+        A+++RR      I+ R+ Q  +EGE+ A  D   L  FY + + G++  A
Sbjct: 127 CSASAEHVQTAMTERRDNVETMIKTRIEQGVKEGELPAGTDPGTLASFYATVIQGMSTQA 186

Query: 183 RD 184
           RD
Sbjct: 187 RD 188


>gi|152982103|ref|YP_001352448.1| TetR family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 247

 Score = 63.2 bits (152), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 97/200 (48%), Gaps = 8/200 (4%)

Query: 5   RGRPRSFDREQALHQAMQVFWSKGYEGTTMADLTAAIGVKAPSLYAAFGDKDALFREVVE 64
           RGRPR FD + AL + + +F ++G+ G ++ D+   + +   S+Y A  DK  +F   ++
Sbjct: 55  RGRPREFDMDDALDKVIPLFCARGFHGASINDIAETMELTVGSIYKALKDKRGVFLAAID 114

Query: 65  VYARTVSAEPLRLLQAGKGIYQDLLAMLRASVRMYSGKTTLPGLPVGKGCMVVVSAINCA 124
               +V    LR   A     +D    LRA++  Y+G +   G  + +GC++V + +  A
Sbjct: 115 -RQLSVRQGALRQTIAAATSGRD---KLRAALMFYAGVSN-TGDDM-QGCLIVSTTVELA 168

Query: 125 PENSEHSDALSQRRHKRRNEIRARLLQ-AQREGEIRADADVTALGDFYTSFLNGLALGAR 183
             + E ++  ++   KRR  I   LL+  + +G I A ++  A        + GL +  +
Sbjct: 169 TFDEEIANR-ARDSLKRREVILNELLKLGETDGSIAAGSNNAATARLMLCLMQGLIIIGK 227

Query: 184 DGVSSARLAATLQPAMLPLE 203
            G +   L A +  AM  L+
Sbjct: 228 AGRTRKELIAVVDAAMKILD 247


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.132    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 472,387
Number of extensions: 18619
Number of successful extensions: 78
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 2
Length of query: 213
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 134
Effective length of database: 928,958
Effective search space: 124480372
Effective search space used: 124480372
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)