BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4182.p
         (233 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982130|ref|YP_001353601.1| hypothetical protein mma_1911 [...   139   2e-34
gi|152982135|ref|YP_001353650.1| hypothetical protein mma_1960 [...   108   4e-25

>gi|152982130|ref|YP_001353601.1| hypothetical protein mma_1911
           [Janthinobacterium sp. Marseille]
          Length = 260

 Score =  139 bits (349), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 81/199 (40%), Positives = 114/199 (57%), Gaps = 3/199 (1%)

Query: 8   PQSIHHSLWRASQLAQGGARCIDTGFAELSQELPGRGWPTGALIDFLLQQPGVGELRLLG 67
           P  +  ++WRA Q+    A  + +G+  L +ELP  GWP   LI+ L+ QPG+GELRLL 
Sbjct: 17  PPVLPDAVWRADQMGSYHASPVPSGYQALDRELPKGGWPPSVLIELLMAQPGIGELRLLA 76

Query: 68  PALQSL--APRRIALVQTPHAPHLIGWQQIGVEAARLLAVRTTTSADAAWAAEQILKSDS 125
           P L  L  A + + L+  PH P+      +G+   +L+ +    +AD  WA EQ LKS  
Sbjct: 77  PTLARLTQAGKTVILLAPPHIPYAAALSDLGIRLPQLILIEVDKAADRIWAIEQTLKSAG 136

Query: 126 CAALLLWQRHLRPESVRRLHLAAQSGQTLFVMLRPGSCAQDASPAPLRLALT-AAPGGIA 184
             ALL W    R + +RRL LAA   + L  + R  S  + +SPAPLR+A   AA G I+
Sbjct: 137 FGALLCWLPQARTDHLRRLQLAAAGTEGLSFIFRLLSAQEISSPAPLRIACQPAARGCIS 196

Query: 185 IDFIKRRGPLRAAPLFVSL 203
           ++ IKRRGP+ AAPL + L
Sbjct: 197 VELIKRRGPVHAAPLILPL 215


>gi|152982135|ref|YP_001353650.1| hypothetical protein mma_1960
           [Janthinobacterium sp. Marseille]
          Length = 255

 Score =  108 bits (269), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 65/194 (33%), Positives = 98/194 (50%), Gaps = 3/194 (1%)

Query: 31  TGFAELSQELPGRGWPTGALIDFLLQQPGVGELRLLGPALQSLAPRRIALVQTPHAPHLI 90
           + +  L  ELP  GWP   LI+ LL QP +GELRLL P L  L      ++    A    
Sbjct: 35  SAYRALDLELPNGGWPASVLIELLLAQPDIGELRLLAPTLTRLTQEGKTVILLAPAHISA 94

Query: 91  GWQQIGVEAARLLAVRTTTSADAAWAAEQILKSDSCAALLLWQRHLRPESVRRLHLAAQS 150
               +G++   L+ +      D  WA EQ +K+    ALL W    RP+ +RRL L A +
Sbjct: 95  ALSDLGLDRDHLILIEADKPMDRIWAVEQAVKNVHFGALLCWLPEARPDHLRRLQLMAAA 154

Query: 151 GQTLFVMLRPGSCAQDASPAPLRLALTAAPGG-IAIDFIKRRGPLRAAPLF--VSLPSLN 207
              L  + RP +   ++SPAPLR+    A  G ++++ IKRRGP+   P+   +++P++ 
Sbjct: 155 NDGLTFVFRPLAAQNESSPAPLRMLCQPATNGRMSVEIIKRRGPVHCKPVVLPLAIPTII 214

Query: 208 LLPHAPVDRRTPAF 221
             P A     +P F
Sbjct: 215 RTPRAARSLSSPVF 228


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.136    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 532,176
Number of extensions: 20070
Number of successful extensions: 64
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 2
Length of query: 233
Length of database: 1,221,021
Length adjustment: 80
Effective length of query: 153
Effective length of database: 925,261
Effective search space: 141564933
Effective search space used: 141564933
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 128 (53.9 bits)