BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4181.p
         (470 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982084|ref|YP_001353602.1| hypothetical protein mma_1912 [...   273   2e-74

>gi|152982084|ref|YP_001353602.1| hypothetical protein mma_1912
           [Janthinobacterium sp. Marseille]
          Length = 504

 Score =  273 bits (697), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 200/475 (42%), Positives = 266/475 (56%), Gaps = 10/475 (2%)

Query: 3   DAAAVVLEHARVIAASPGAREAGVRVGMTRGGVLALLPQAPLHDRAPEREAQQRFAVATA 62
           DA  V+ E       +  A +AG+R GM+     AL        R   +E +     A  
Sbjct: 33  DAPIVICERQVAGWCNQLAEDAGIRAGMSEASARALAAGLQTLQRDTGQETKALQEAALW 92

Query: 63  LLQYTPQASVSDHATLVLDIGASLRLFGGIRALRRRVCQTVKQLGLTARVSCAPTAAGAA 122
            L +TP   +     L+L++GASLRLFGG + +  ++   + +LGL AR++ A TA  A 
Sbjct: 93  CLHFTPHVVLKPDG-LLLEVGASLRLFGGHQRIATQLLGGLLELGLQARLASAATAGAAW 151

Query: 123 LLARY-GAGNVL-QMAHLHRKLDRLPVAASPAAGPYLDWLDGIGCRTLSDLRRLPRAGVQ 180
           L A+  G   V      ++  LD LP+    +A  +LD LDGIGCR L +LR+LPRAGV 
Sbjct: 152 LRAQSDGISKVFAHDGDINEALDPLPLHVLDSAQAHLDTLDGIGCRRLGELRQLPRAGVA 211

Query: 181 RRADARMLELLDRAYGTAPELHTWIEMPPSFRQRIEFNARIESAEAAQHAIQALLVQLCG 240
           RR    +L  LDRAYGT  E H W E P  F  ++E  AR+E+ EA   A + LL+QL G
Sbjct: 212 RRFGQALLSELDRAYGTEAEAHLWFEAPVIFDVKLELPARVENTEALLFAARRLLLQLTG 271

Query: 241 WLSARQLAVTQVQVALEHERGRQAVA-PTMIQLSLAEPTWVDTHLMRLLKERLAQLELCA 299
           WLSAR  AV  + + L HE  RQ     T + + L  P+    HL  LL+ERLAQLEL A
Sbjct: 272 WLSARHAAVAGITLCLHHESSRQRDHRRTNVNIMLGMPSRDIDHLALLLRERLAQLELIA 331

Query: 300 PVIAAVLEATQTEAMAPASEDLFPEPGGSPADYKRLVELLIARLGPEQVRQASPLADYRP 359
           PVI   L+A Q  A A  + +LFP P     +  RLVE L +RLG E VRQ S  AD+RP
Sbjct: 332 PVIEISLKAEQITAQAAPNTELFPTPSSDAENTGRLVERLQSRLGHEAVRQLSVFADHRP 391

Query: 360 EQANRWVSVMT-PAGRLD--EHPFDAHPFAPRPTWLLEQPIALSLRQHRPYYGSRLRPIS 416
           E++     + T P  R +  +     HP   RPTWLL QP+AL+  QH+P+Y S L  ++
Sbjct: 392 EKSVMSSVLNTRPNARRNAADEAAATHPPCLRPTWLLPQPLALNTHQHKPFYQSPLTLLT 451

Query: 417 PPERIEAGWWNGQLVTRDYYIAEDVKHCQYWIYRER-IGDVEGIEPQWYLHGLFG 470
            PERIE+GWW+  L TRDY+IA++ +H   WI+R R    V G    W+LHGLF 
Sbjct: 452 GPERIESGWWDDALATRDYFIAQNEQHLLLWIFRLRTTSTVSG--SGWFLHGLFA 504


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.136    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,132,800
Number of extensions: 46370
Number of successful extensions: 143
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 138
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 1,221,021
Length adjustment: 87
Effective length of query: 383
Effective length of database: 899,382
Effective search space: 344463306
Effective search space used: 344463306
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)