BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4179.p
         (384 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979982|ref|YP_001355275.1| DNA-damage-inducible protein p ...   555   e-159

>gi|152979982|ref|YP_001355275.1| DNA-damage-inducible protein p
           [Janthinobacterium sp. Marseille]
          Length = 401

 Score =  555 bits (1431), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 273/376 (72%), Positives = 315/376 (83%)

Query: 5   RRIAHLDMDAFYASVELLRYPDLRGQAVVIGGGSATRPVELPDGTRQYFRLRDYAGRGVV 64
           RRIAHLDMDAFYASVELLRYP+LRGQ VVIGG S   P+   DG+RQY RLRDYAGRGVV
Sbjct: 22  RRIAHLDMDAFYASVELLRYPELRGQPVVIGGMSVHAPLTQADGSRQYARLRDYAGRGVV 81

Query: 65  TTSTYEARALGVFSAMGIMKAAQLAPEAILLPTDFEAYRKYSRLFKDAVRNIAPLIEDRG 124
           TTSTYEARALGVFSAMGIMKAA+LAP+AILLP DF+AYR YSRLFK AV +IAP IE+RG
Sbjct: 82  TTSTYEARALGVFSAMGIMKAAKLAPDAILLPVDFDAYRHYSRLFKQAVADIAPHIENRG 141

Query: 125 IDEIYIDLSAWPDTAHEVARQIKQAVHAATALTCSIGVAPNKMLAKISSELDKPDGLTIL 184
           IDEIYIDLS   +  H +A +IK AV  AT L+CSIG+APNK+LAKI S+L+KP+GLTIL
Sbjct: 142 IDEIYIDLSEHAEETHALASRIKNAVQQATGLSCSIGIAPNKLLAKICSDLEKPNGLTIL 201

Query: 185 MPEDIQRRIWPLPVRKINGIGPKAAEKLAALGLETVADLAGAAPELLRAHFGRSYSEWLG 244
              DI  RIWPLP RKINGIGP+AAEKL ALGL T+ +LAGA   LL  HFGRSY++WLG
Sbjct: 202 TQADIATRIWPLPARKINGIGPRAAEKLTALGLNTIEELAGADATLLHEHFGRSYADWLG 261

Query: 245 RVAQGIDERPLQTYSEPKSISRETTFERDLHARADRAQLSEIFTALCVKLAGDLERKGYV 304
           RVAQGIDERP+ TYSEPKS+SRETTFE +LHA+ DR  L  IFT LC ++AGDLERKGYV
Sbjct: 262 RVAQGIDERPVVTYSEPKSVSRETTFENNLHAKRDREALGGIFTRLCERVAGDLERKGYV 321

Query: 305 GRTIGIKLKYADFRGVTRDVTLPAPTGEAALIRQAAGECLKRVPLEKKLRLLGVRVGTLS 364
           GRT+GIKL++ADFR VTRD+TLPA T +A  IRQAAGECLKR+PL++  RLLGVR+GTL+
Sbjct: 322 GRTVGIKLRFADFRIVTRDLTLPAYTDDAVAIRQAAGECLKRIPLDQPFRLLGVRIGTLA 381

Query: 365 KKEALAALPQAVQGEL 380
           +K++L A    +QGEL
Sbjct: 382 RKDSLPAEDPVLQGEL 397


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.136    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 890,306
Number of extensions: 36385
Number of successful extensions: 113
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 113
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 299
Effective length of database: 906,776
Effective search space: 271126024
Effective search space used: 271126024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)