BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4177.p
         (432 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981251|ref|YP_001351766.1| hypothetical protein mma_0076 [...   552   e-158
gi|152980938|ref|YP_001352178.1| hypothetical protein mma_0488 [...    59   6e-10

>gi|152981251|ref|YP_001351766.1| hypothetical protein mma_0076
           [Janthinobacterium sp. Marseille]
          Length = 413

 Score =  552 bits (1422), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 269/401 (67%), Positives = 322/401 (80%)

Query: 14  VAVIGAGPAGLMAAEVLAAHGVAVDVYDAMPSAGRKFLLAGRGGMNITHSEAQPDFLPRY 73
           VAVIG GPAGLMAAEVL A GV VD+YDAMPS GRKFLLAG+GGMN+TH+EAQP F+ RY
Sbjct: 9   VAVIGGGPAGLMAAEVLIAQGVQVDLYDAMPSVGRKFLLAGKGGMNLTHTEAQPAFVARY 68

Query: 74  GKRREQVAPFVRRFDGEQLRAWIHELGIETFVGSSGRVFPREMKAAPLLRAWLHRLRQAG 133
           G R  Q+A  ++ FD E LR W+H LGI TFVGSSGRVFP +MKAAPLLRAWL RLR AG
Sbjct: 69  GARAAQIAAMLQDFDPEALRNWVHALGIPTFVGSSGRVFPTDMKAAPLLRAWLKRLRDAG 128

Query: 134 VQFHMRHRWLGWQEDGALRLAHPEGEIAVRPDAVVLALGGGSWPRLGSDGSWVPLLQARQ 193
           V+FHMRHRWLGW EDG LR + P  E+ ++ DAVVLALGGGSW RLGSDG W+P+L  + 
Sbjct: 129 VRFHMRHRWLGWDEDGKLRFSTPSDELHIQADAVVLALGGGSWARLGSDGKWLPVLAQQG 188

Query: 194 VEVAPLLPSNCGFELDWSAHFRERFAGEPVKPVVASTAHASGGVQNRRGEFIVTAEGIEG 253
           +  APL  +NCGFE++WS HFRER+AG+PVKPVVA+   + G  Q R+GEF+++  G+EG
Sbjct: 189 IPSAPLQAANCGFEVEWSPHFRERYAGQPVKPVVATYQDSQGQAQQRQGEFVISESGVEG 248

Query: 254 SLVYAMSAALRDTIAAEGSARLYLDLLPDWPLEKVEAELAHPRGARSLSSHLQSRLHLKG 313
           SL+YA+S+ALR+ I A+GSA L LDL P    E+V  E++HPRG+RS++SHLQS++ + G
Sbjct: 249 SLIYALSSALREQINADGSATLTLDLAPGKSAERVLEEVSHPRGSRSMASHLQSKVGIAG 308

Query: 314 VKAGLLRELLSKEDFADMGKLARAIKALPLTVWRTRPLAEAISSAGGVSFEALDDALMLR 373
           VKAGLL E LSKED+A   KLA AIKALPL +   RP+ EAISSAGGV FEALD+ LM  
Sbjct: 309 VKAGLLHEYLSKEDYARPEKLAAAIKALPLRLTAARPIDEAISSAGGVLFEALDEHLMAL 368

Query: 374 ALPGVFCAGEMLDWEAPTGGYLLTACFATGRAAGAGVLHWL 414
            +PGVFCAGEMLDWEAPTGGYLL+ACFA+GR AG GVL+WL
Sbjct: 369 KMPGVFCAGEMLDWEAPTGGYLLSACFASGRTAGEGVLNWL 409


>gi|152980938|ref|YP_001352178.1| hypothetical protein mma_0488
           [Janthinobacterium sp. Marseille]
          Length = 398

 Score = 58.9 bits (141), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 103/421 (24%), Positives = 174/421 (41%), Gaps = 53/421 (12%)

Query: 14  VAVIGAGPAGLMAAEVLAAHGVAVDVYDAMPSAGRKFLLAGRGGMNITHSEAQP-DFL-- 70
           VAVIGAG AG+M A V    G +V + D       K  ++G G  N T+ +A P +FL  
Sbjct: 7   VAVIGAGAAGMMCASVAGQRGKSVVLIDHAAKLAEKIRISGGGRCNFTNIDATPQNFLSQ 66

Query: 71  -PRYGKRREQVAPFVRRFDGEQLRAWIHELGIETFVGSSGRVFPREMKAAPLLRAWLHRL 129
            P + K        + R+  +   A +    I       G++F  +  A  ++       
Sbjct: 67  NPHFCKSA------LSRYTPQDFLALMKRYRIAYHEKHKGQLFC-DNSAEDIINMLKAEC 119

Query: 130 RQAGVQFHMRHRWLGWQEDG-ALRLAHPEGEIAVRPDAVVLALGGGSWPRLGSDGSWVPL 188
               V + M    +   + G   R+    G+I    +++V+A GG S P++G+      +
Sbjct: 120 ALGNVSWRMPCTVVSIAKSGEQFRIETNTGDILA--NSLVIATGGLSIPKIGATDFAYRI 177

Query: 189 LQARQVEVAPLLPSNCGFELDWSAHFRERFAGEPVKPV--VASTAHASGGVQNRRGEF-- 244
             A+Q ++  + P      L + A+     A +P  P+  +A       G +  RG F  
Sbjct: 178 --AKQFDLKMIEPRPGLVPLTFDAN-----AWQPFVPLSGIALPVEVETGAKKTRGYFKE 230

Query: 245 --IVTAEGIEGSLVYAMSAALRDTIAAEGSARLYLDLLPDWPLEKVEAELAHPRGARSLS 302
             + T  G+ G  +  +S+        +    L ++L+P+  + +   E     G  S  
Sbjct: 231 DLLFTHRGLSGPAILQISSFW------QPGTPLTINLVPETDIAEALIE-----GKASSK 279

Query: 303 SHLQSRLHLKGVKAGLLRELLSKEDF------ADM-GKLARAIKALPLTVWRTRP----- 350
            +L ++L  + + + L  E L+  DF      ADM  K  R + A  L  W   P     
Sbjct: 280 KNLGNQLA-QWLPSRLADEWLAVNDFKADARVADMQDKQLRKLGA-SLNQWSIIPNGSEG 337

Query: 351 LAEAISSAGGVSFEAL-DDALMLRALPGVFCAGEMLDWEAPTGGYLLTACFATGRAAGAG 409
             +A  + GG+    L    +M+  +PG+   GE +D     GGY     +A+G AAG  
Sbjct: 338 YRKAEVTLGGIDTRELSQQTMMVSKVPGLHFIGESVDVTGWLGGYNFQWAWASGVAAGQA 397

Query: 410 V 410
           V
Sbjct: 398 V 398


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.136    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,116,781
Number of extensions: 50042
Number of successful extensions: 181
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 180
Number of HSP's successfully gapped: 2
Length of query: 432
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 346
Effective length of database: 903,079
Effective search space: 312465334
Effective search space used: 312465334
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)