BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4176.p (247 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982686|ref|YP_001351971.1| ABC-type glutamate/aspartate tr... 121 4e-29 gi|152981390|ref|YP_001351970.1| glutamate/aspartate ABC type tr... 106 1e-24 gi|152981388|ref|YP_001351724.1| ABC-type amino acid transport s... 92 3e-20 gi|152982785|ref|YP_001351725.1| ABC-type amino-acid transport s... 66 2e-12 >gi|152982686|ref|YP_001351971.1| ABC-type glutamate/aspartate transport system permease protein [Janthinobacterium sp. Marseille] Length = 228 Score = 121 bits (304), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 83/240 (34%), Positives = 128/240 (53%), Gaps = 18/240 (7%) Query: 2 DFRWSIIQGYAPLFAKGVLMTLQVSLVSILIGTVIGLLVGMLRLAEVQHGPWKWPTRLMR 61 D + II P G+ TLQ+++V+ G + G L+ M RL+ + + Sbjct: 3 DLDFEIITRTWPYLLAGLQYTLQLTVVAAFGGVIFGTLLAMARLSS---------NKTLS 53 Query: 62 WLAGLYVAFFRGTPLFVQIMLIHFAVMPLLVQQEHGLLITGELARTIKQDYGAFLSGTVA 121 +A YV R PL + I +F +MP+++Q ITG R ++ GA S + Sbjct: 54 LIAAAYVNLMRSIPLLLVIFWFYF-LMPIVLQT-----ITGS-ERPVQ--LGADRSAYIT 104 Query: 122 LSLNAGAYISEIFRAGIQSIERGQSYAAASLGMNYGLTMRYVVLPQAFRRMLPPLGNEAI 181 + AY EI RAGIQSI +GQ A +LG+ Y +M+ VVLPQAFR MLP L + I Sbjct: 105 FIMFEAAYFCEIMRAGIQSISKGQVNAGYALGLTYRQSMQLVVLPQAFRNMLPILLTQTI 164 Query: 182 TLLKDSSLVSAIGLAELAYAARTVAGTYARYWEPYITISVLYFSMTICLALLVARLENKY 241 L +D SLVS + + + AA VA +R E Y+ ++++YF ++ L+ LV +L+ ++ Sbjct: 165 VLFQDVSLVSLLNVTDFVGAAVKVAQRDSRVVEMYLFVAIVYFVLSFALSTLVKQLQKRF 224 >gi|152981390|ref|YP_001351970.1| glutamate/aspartate ABC type transport system permease protein [Janthinobacterium sp. Marseille] Length = 243 Score = 106 bits (264), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 76/228 (33%), Positives = 122/228 (53%), Gaps = 16/228 (7%) Query: 17 KGVLMTLQVSLVSILIGTVIGLLVGMLRLAEVQHGPWKWPTRLMRWLAGLYVAFFRGTPL 76 G+ TL V+L + + V+G +VG+ R +E +W RL G YV FR PL Sbjct: 23 SGLGWTLAVALFAWIFAFVVGSIVGVGRTSEK-----RWLVRL----GGAYVELFRNIPL 73 Query: 77 FVQIMLIHFAVMPLLVQQEHGLLITGELARTIKQDYGAFLSGTVALSLNAGAYISEIFRA 136 VQ + +F V+P LV +IT L T Q F++ V L + I+E R+ Sbjct: 74 LVQFFVWYF-VVPGLVPAVKAWVIT--LDPTEHQ----FVTAVVCLGFFTSSRIAEQVRS 126 Query: 137 GIQSIERGQSYAAASLGMNYGLTMRYVVLPQAFRRMLPPLGNEAITLLKDSSLVSAIGLA 196 GIQ++ RGQ A +LG+ T RYV+LP A+R ++PPL +E + L+K++++ +IGL Sbjct: 127 GIQALPRGQRNAGYALGLTTAQTYRYVLLPMAYRIIIPPLTSELMNLIKNTAVAYSIGLV 186 Query: 197 ELAYAARTVAGTYARYWEPYITISVLYFSMTICLALLVARLENKYRAP 244 EL + R + RY+E + +++Y + + L+A +E + P Sbjct: 187 ELFFRTREMGEMTFRYFEAFGAATLIYVVIAMTANRLMALVERRLAVP 234 >gi|152981388|ref|YP_001351724.1| ABC-type amino acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 218 Score = 92.4 bits (228), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 58/186 (31%), Positives = 99/186 (53%), Gaps = 18/186 (9%) Query: 60 MRWLAGLYVAFFRGTPLFVQIMLIHFAVMPLLVQQEHGLLITGELARTIKQDYGAFLSGT 119 +R +A +Y+ F+GTPL +Q+ L+ F G+ + G + A+L+ Sbjct: 49 LRNVARIYIEIFQGTPLLMQLFLVFF-----------GIALFG-------IEVPAWLAAG 90 Query: 120 VALSLNAGAYISEIFRAGIQSIERGQSYAAASLGMNYGLTMRYVVLPQAFRRMLPPLGNE 179 + L+L + ++++EI+R +++I RGQ A++ L MNY MRYV+LPQA R LPP Sbjct: 91 LTLTLWSASFLAEIWRGCVEAIPRGQWEASSVLAMNYVQQMRYVILPQALRIALPPTIGF 150 Query: 180 AITLLKDSSLVSAIGLAELAYAARTVAGTYARYWEPYITISVLYFSMTICLALLVARLEN 239 ++ ++K +++ S IG EL+ AA + + Y + YF + L+ LE Sbjct: 151 SVQIIKGTAVTSIIGFVELSKAATVITNATFMPFTVYAAAGLFYFILCWPLSRYSQFLER 210 Query: 240 KYRAPH 245 K+ A H Sbjct: 211 KFHAAH 216 >gi|152982785|ref|YP_001351725.1| ABC-type amino-acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 223 Score = 66.2 bits (160), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 34/101 (33%), Positives = 61/101 (60%) Query: 117 SGTVALSLNAGAYISEIFRAGIQSIERGQSYAAASLGMNYGLTMRYVVLPQAFRRMLPPL 176 + +A+ +N GAY +EI RAG+ ++ RGQ AA SL M R+++L A +++ P L Sbjct: 92 AAILAMVINLGAYSTEIIRAGVVAVARGQIEAALSLSMTRVQIFRHIILRPALQKIWPAL 151 Query: 177 GNEAITLLKDSSLVSAIGLAELAYAARTVAGTYARYWEPYI 217 ++ + ++ S++ S I + EL++AA + G R +E Y+ Sbjct: 152 SSQIVIVMLGSAVCSQIAVEELSFAANFIQGRNFRAFEAYL 192 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.328 0.140 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 555,266 Number of extensions: 22440 Number of successful extensions: 120 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 115 Number of HSP's successfully gapped: 4 Length of query: 247 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 166 Effective length of database: 921,564 Effective search space: 152979624 Effective search space used: 152979624 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 128 (53.9 bits)